Synechococcus sp. PCC 6312: Syn6312_2764
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Entry
Syn6312_2764 CDS
T02370
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syne
Synechococcus sp. PCC 6312
Pathway
syne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Syn6312_2764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syne03019
]
Syn6312_2764
03400 DNA repair and recombination proteins [BR:
syne03400
]
Syn6312_2764
Enzymes [BR:
syne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syn6312_2764
Messenger RNA biogenesis [BR:
syne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Syn6312_2764
DNA repair and recombination proteins [BR:
syne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Syn6312_2764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFY61844
LinkDB
All DBs
Position
complement(2713576..2715768)
Genome browser
AA seq
730 aa
AA seq
DB search
MLPLEALKHYFGYEAFRPGQADIITASLNQQDVLAILPTGGGKSICFQLPALLKTGITLV
VSPLIALMLDQVVALQKNGIAATFLNSTLSAAEARGRIAAIMAGEVKLLYVAPERLVSDS
FTALLETIHQTVGISSIVVDEAHCVSEWGHDFRPDYRQLSRLRERFPTIPVIALTATATH
RVRTDITEQLSLKKPFVHVASFNRPNLYYEVIEKSRGKVSLSELTGYIKETEGSGIIYCM
SRKQVEKLASELNENGISALPYHAGLSNETRTDHQTRFIRDDVQIMVATVAFGMGINKPD
VRFVIHYDLPQTIEGYYQESGRAGRDGEPARCTLFFSPGDIKQADWFIQNKVHPETNEPL
EDEQRIARQQLRQIAAYADSTLCRRTTLLGYFGEVFGGNCGQCDNCRFPKPKQDWTIEAQ
KFLSCVARTNERFGIRHIVDILRGSTQDKVIKYGHDKLSTFGIGLDKSIKEWQHLARSLV
QQNLVNESDDGYGILTLNTLSWAVLRGQHQVWVSMPNQLSKEKVTVEKEPNLGPIHTGLF
QSLRTLRKELADDQGIAPYLIFTETSLKEMARYRPCSLASFSRITGVGDKKLEVYGSTFV
NRIFSYCKTHGLSEAMPHFIPREAVPEKKAAGERTRNVCKLFQNGLYPQDIAKSLEMKVQ
RVYEHLADGIEAGQIASIEKLVSSERQTTMLKAFDKHGADRLKPIYEELNEQFSYEELRV
VRALWKVKSK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgttgccattagaggccctcaagcattatttcggatatgaggcgtttcgccccggacag
gcagacatcattacagcttctctcaatcagcaagacgttttagcaatcctcccaacgggt
ggggggaagtccatctgcttccagttacccgcccttctcaaaacaggcatcaccttagtt
gtgtctcccctgattgccctgatgttagaccaggtggtggccttacagaaaaatggcatt
gccgccacatttttgaacagcactttatcggccgcagaagccaggggaagaattgcggcc
atcatggccggggaagtgaagttactctacgttgccccggagcgattagttagtgactcc
tttaccgccttgctcgaaaccattcaccagaccgttggcatcagcagcattgttgtagat
gaagcccattgcgtatcggaatggggccatgacttccgacccgactatcgccaactcagt
cggctgcgagaacgattcccaactatccccgtcatcgcattaaccgccacagctacccac
cgcgtccgaaccgacattaccgaacaactctctctgaaaaagccctttgtccatgtcgcc
agctttaaccgccctaacctctactacgaagtcattgaaaaaagccgaggcaaagtcagc
ctatcggaactcactggctacatcaaggagacagaaggctctggcatcatctactgcatg
agccgcaaacaggttgaaaagctggccagtgaattaaacgagaatggtatttcagccctg
ccctaccatgctggactgagtaacgaaacccgtaccgaccatcaaacccgttttattcgg
gacgatgtgcaaatcatggtggccaccgttgcctttggcatgggcatcaacaaacctgat
gtccgctttgtcatccattacgatctgccccaaaccatcgaaggctattaccaggaatcc
ggtcgggccggtcgggatggtgaaccggcccgatgcacgctgttcttcagccctggagac
atcaaacaagcagactggtttattcagaacaaggttcacccggaaaccaatgaacccctg
gaagatgagcagcgcatcgccagacaacaactccggcagattgccgcctatgccgacagc
accctctgtcgcagaacaaccctcctcggctacttcggtgaagtctttggcggaaactgt
ggccagtgtgataactgccgctttcccaaacctaaacaagactggacaatcgaagcccaa
aagtttctctcctgtgtggcccgcaccaatgaacgctttggcatccgccacatcgttgat
attctccgaggctcaactcaagacaaggttatcaagtacggtcacgacaaactctcaacc
tttggcattggccttgataagtcaatcaaggaatggcagcatctagcccgcagtctcgtc
caacaaaacttggttaatgaatcggatgatggctacggtatcctcaccctcaataccctg
agttgggcggtacttagaggacaacaccaagtctgggtatcaatgcccaatcaactcagc
aaggaaaaagtaacggtcgaaaaagaacccaacctgggccccatccatactggactattc
caatcactgcgtacccttcgcaaagagttagctgatgaccagggcatcgcaccttacctc
atcttcaccgaaacaagtctgaaggagatggcccggtatcggccctgtagcctagccagc
ttcagccgaatcacgggtgtcggggacaaaaaactagaagtctatggctcaaccttcgta
aaccgcattttctcttattgcaaaacccatggcctcagtgaagccatgccccacttcata
cccagagaagctgtcccagagaagaaagcagccggagaacgaacacgcaatgtctgcaaa
ctattccaaaatggactctaccctcaagacatagcaaaaagccttgaaatgaaagtacag
cgggtctatgaacacttagccgatggaatcgaagctggacaaatcgccagcatcgaaaaa
ttagtctcctcagaacgtcaaaccactatgctcaaagcctttgataaacatggagccgac
cgactcaagcctatctatgaagaactcaatgaacaattctcctatgaagaactaagagtg
gttagagcgttatggaaagtaaaaagcaaataa
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