Synechococcus sp. PCC 6312: Syn6312_3103
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Entry
Syn6312_3103 CDS
T02370
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K03090
RNA polymerase sigma-B factor
Organism
syne
Synechococcus sp. PCC 6312
Brite
KEGG Orthology (KO) [BR:
syne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syne03021
]
Syn6312_3103
Transcription machinery [BR:
syne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Syn6312_3103
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_r3
HTH_Crp_2
Sigma70_ECF
HTH_17
DUF134
HTH_23
KORA
HTH_3
HTH_28
HTH_24
HTH_8
HTH_Tnp_ISL3
HTH_30
Xre-like-HTH
Crp
HTH_38
MarR_2
SpoIIID
GerE
Motif
Other DBs
NCBI-ProteinID:
AFY62153
LinkDB
All DBs
Position
complement(3031358..3032134)
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AA seq
258 aa
AA seq
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MSLDTSLDSTAALIKAFQENGCPKTRNSLVQLNMGLVRKEAHRWVHYSQETFEDLVQVGT
LGLIRAVERFDPNHGSAFSTFAMVYIRGEIQHYLRDKSTHIRVPRRWQTLYRQGSRLTSE
LRQYLDRQPTNQEIATGLQIGVEEWEQIKFAYVNCLPLSLDAPVSEATEDSTSLGETLPD
QHYRSFQLAQEDQIRLQQCLQKLEARTCEILEFVFLHDLSQKETAELLGISAVTVSRQVK
KGLEHLRRLMVHENEAGN
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgtccctagatacttcccttgattcaactgcggccctgattaaagcctttcaagaaaat
ggttgcccaaagacacgcaattccctcgttcaactcaacatgggcctggtacggaaagaa
gctcaccgttgggttcattattcccaagaaacctttgaagaccttgtccaagttggcaca
ctcggcttaattcgggctgtggaacgatttgaccccaatcatggctctgcttttagcacc
tttgctatggtttatatccgaggtgaaatccaacattacctacgggataaaagcacccat
attcgcgtcccccgccgctggcaaaccctctatcgtcaaggcagtcggctgacttcggaa
ttacggcaatacctcgatcggcaacccactaatcaagaaattgccacgggcctccagatt
ggtgttgaagagtgggaacaaattaagtttgcctatgtgaactgcttacccttgagcttg
gatgcccctgttagtgaggcaacggaagatagtacctccttgggggaaaccttaccagac
cagcattaccggagttttcaactggctcaagaagaccaaatccgtctccagcaatgttta
caaaagttagaagcccgtacctgcgagattttagaatttgtttttctccatgacctcagc
caaaaggaaaccgccgaattattggggatcagtgcggtcacggtgtcgcggcaagtgaaa
aagggcctggagcatttacggcggttgatggttcatgagaatgaggcgggtaattaa
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