Synechocystis sp. PCC 7338: HTZ78_01440
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Entry
HTZ78_01440 CDS
T10297
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
synh Synechocystis sp. PCC 7338
Pathway
synh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HTZ78_01440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synh03019
]
HTZ78_01440
03016 Transfer RNA biogenesis [BR:
synh03016
]
HTZ78_01440
Enzymes [BR:
synh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HTZ78_01440
Messenger RNA biogenesis [BR:
synh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HTZ78_01440
Transfer RNA biogenesis [BR:
synh03016
]
Prokaryotic type
tRNA degradation factors
HTZ78_01440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QUS59470
LinkDB
All DBs
Position
285745..288090
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AA seq
781 aa
AA seq
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MDYSIATLLSYFVDDKLVAGKFLEKKLGCESPEAIEALQIVLDALEKMGVLVKERGKYKR
VSREDVVEARLRCSSKGFCFAIQDDEDATDIYVREGNLSNAWNGDRVLVKVIKDGTRRKS
PEGAVHLILDRANPSLLAQVKKSEDNYRAVPLDDRLLFELELKDEEQNLAEAVDHLVHVS
VLRYPIAQHPPLGEVTKVLGSDAEAAADTDIVSCKHDLPLGWTPEAIEALQNLPKVIEPG
ELKKRQDYRKLQLITFGDRPRGETLPWQEVALSLESQSNQWQVGIHITDIAHYIAEDSLL
DQLAHKRGTTVYLEEQVCPLFPEGLTGRCSLIPDEDRLALSFFLTVDDRGEVTGFEYHSS
VVKVDHQLDFSEVQSALADIESVNDKLKPYSGLLQELFFQICPLIKSQRLQRGSFNLQTE
TASPRLDEGRLGVIMTQETLPIRSLLAELMVVLQQQVALQLQGLGIPGLYCGQVAPEAED
LTDIVKLVENLDLGVKIDLEGDIIPQHYHHLSQAFESLPAKAVLNHLLANTLKIEKYFSH
PAPHFALAYDSGYTHCVSPAQRYGDLVVQRLLKLVLAEGRDRRTKQMKTGVDLNAHTCRN
QISWNVLPPNLQETIEGDLHQLVLGLNDREQTAEDAEKDLLGLKKAEKMKARTGEIFRGL
ITGVQSYGFFVQIFDLLAEGLVHVSSLKDDWYEFRSRQCALVGRKSRTSYRLGNEVDVQV
RSVDYYRQQIDLGAVNNAPKGSANIDLDDDDEDGDDRDEEDTMDWDAMEDGDDDEGGAVI
F
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggattattcgatcgccacacttttgtcctattttgttgatgacaaattagtagcgggt
aaatttctcgagaaaaaattaggttgtgaaagtcctgaggccatagaagccctgcagatt
gtcctcgatgccctggaaaaaatgggcgtactggtcaaggagcgggggaagtataaacgg
gtatcccgggaagatgtggtggaagcacggctgcgttgctccagtaagggtttttgtttt
gccatccaagacgatgaagatgccaccgatatttacgtccgggaagggaatctcagcaat
gcctggaacggcgatcgggttttagtcaaagtgattaaagatggtacccgccgtaaatcc
cccgaaggagccgtccatctcatccttgatcgggccaatccttccctgttagctcaggtg
aaaaaaagcgaagataattaccgggctgtgcccctggatgaccgcttgctatttgagcta
gaactcaaagatgaagagcaaaacctcgcagaggcagtggatcacctcgtccatgtttcc
gttctccgttatcccattgcccagcacccgcccctaggagaagttaccaaagtgctgggt
agtgacgctgaagccgccgccgacaccgatattgtctcctgtaagcatgatttgccccta
ggctggactcccgaagccatagaagctctgcaaaatttgcccaaggtaattgaaccagga
gaactgaaaaaaaggcaggattatcgcaaactccagttaattacctttggcgatcgcccc
cggggagaaaccttgccctggcaggaagtggccctgagcctagaaagccaatcaaaccaa
tggcaagtgggtattcatatcaccgacattgcccactacattgccgaagatagtctgtta
gaccagttggcccacaaacggggcaccaccgtatatctggaagaacaggtttgccctctt
ttccccgaaggcttgaccggacgctgttccctcatccctgatgaagatcgcttggcctta
tctttctttctcacagtggatgaccggggggaagtaaccgggtttgaataccacagcagt
gtggtcaaagtcgatcatcaactggacttcagcgaagtgcaatcggccctggcggatatt
gaatccgtcaatgacaagttgaaaccctacagcggtctgctccaggaactatttttccaa
atttgccccctgattaaatcccaacgcctacaacgggggagtttcaacctccaaacagaa
acggcttccccccgcctggatgagggccgtttaggggtaatcatgacccaagaaaccctg
cccattcgtagcctgttagcagaactgatggtggtgttgcaacagcaagtggcgctccaa
ctccaaggcctggggataccaggtctctactgtgggcaagtggcaccggaagctgaggat
ctgacagatattgttaagttagtggaaaacctagatttaggggtaaaaattgacctagaa
ggggacattattcctcagcattaccatcacctcagccaggcatttgagtccctcccggct
aaagcggtgttgaaccatttgctggccaataccctcaaaattgaaaagtattttagccat
cccgctccccactttgccctagcctacgattccggttacactcactgtgtttcccctgcc
caacgatatggggacttggtggtgcaacggttactgaaactggtattggcggaggggcgc
gatcgccgtaccaaacaaatgaaaaccggggtggatctcaatgcccacacctgccgcaac
cagattagctggaatgtgttgccgcccaacctccaggaaaccattgaaggggatttgcac
cagttagtgttgggactcaatgaccgggaacaaaccgctgaagatgcggaaaaagatctg
ttggggctgaaaaaagccgaaaaaatgaaagcccgcaccggggaaatcttccgggggtta
atcaccggcgtccagtcctacggcttctttgtgcaaattttcgatctactagctgaaggc
ctcgtccatgttagttccctcaaagatgactggtatgagtttcgcagccgtcaatgtgcc
ctagtaggacgcaaaagtcgcacttcctaccgcttaggcaacgaggtggacgtgcaggtg
cgcagtgtggactattaccgtcaacaaattgacctcggagcagttaacaatgcccccaaa
ggttctgccaatatcgatttggatgatgatgacgaagatggggatgatcgcgatgaagaa
gacaccatggattgggatgccatggaagatggagatgatgacgaagggggggcggtaatt
ttctag
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