Synechocystis sp. PCC 7338: HTZ78_05545
Help
Entry
HTZ78_05545 CDS
T10297
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
synh Synechocystis sp. PCC 7338
Brite
Enzymes [BR:
synh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HTZ78_05545
Transfer RNA biogenesis [BR:
synh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HTZ78_05545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QUS60188
LinkDB
All DBs
Position
1140557..1142557
Genome browser
AA seq
666 aa
AA seq
DB search
MEKGKLIEFRHQGERRLAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPGGPYTTDDL
PSFLGEVEPYLDPSSLEVAWELLVEDGESITPADLALLLFSGQNPSQCYAAHALLAEDKL
YFKQKGDRYEPRPSVQIEEIKHQMQVQAQKEEEQQGFIDRVNQVLVGETVTWQGSDRLRL
EALEKFILFPDQNHRQALDILQSLGKPGRTDETQNLLIELGIWQRHENLFLRRSAYPNQF
PAKVSDVAHAYLTNPPPDPDQERLDLTGLKTYTIDDESTSEIDDGLSVETLADGGHRLWI
HVADPTRLLTPNDELDLEARKRSTSLYLPTGMISMFPPALATGPMSLLQGQRCVALSFGV
ILDEVGAVRDFTIAPSWVKPTYRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQ
GAITIKMPEAIIKVNADEEVQIYLQETSVSRQLVAEMMILAGEVAGRFSQEHGIPVPFRG
QPQPELPSDEELLSLPPGPVRECAVRRCMPRSEVGITPSRHASLGLDLYSQATSPIRRYT
DLITHFQIKAYLRGEPLPFSGEQVQEILYSVMPSSKEATLVERQTNRYWSLEFLRRNINE
VWQGVMLRWLREDDGLGLILLEELGLELPHRFDRPISPGDRLSLKVSNADPHRDEIRFRE
LLANEA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaaggcaaactaattgaattccgacatcaaggagaacggcggttggcggtggtc
gatcgcccggacggtaaaaaggattgggtggtcatcgaccaacaggggcaaagccataaa
ctaaagccccagcgggtggagtacgaaattcccggcggcccctataccaccgacgatttg
cctagttttttaggggaagtggaaccttatctcgacccttctagtttggaggtggcctgg
gaattgttagtggaagatggggaaagcattaccccggcggatttagccctactattattt
tctggccagaaccccagccaatgctatgccgcccatgccctgctagcggaagataagctc
tacttcaaacaaaaaggcgatcgttacgaaccccgccccagcgttcaaatcgaagaaatt
aaacaccaaatgcaggtgcaagcccaaaaagaagaggaacaacagggctttattgaccgg
gtgaaccaagtcctagtcggagaaaccgtaacttggcaagggagcgatcgcctacggcta
gaggccctggagaaattcatccttttcccagaccaaaaccatcgccaggccttggatatt
ttgcaaagccttggtaaacccggccgcaccgacgaaacccaaaacctcctgatagaatta
ggcatctggcaacgccatgaaaatctctttttgcgtcgtagtgcttaccccaaccaattc
cccgccaaggtatctgatgtggcccatgcttacctaaccaatcctccccccgaccccgac
caagaacgcctcgatctaaccggcttgaagacctacaccattgacgatgaaagcacttcg
gaaattgatgacggcctgagcgtggaaaccttggcggacggcggccatcggctttggatc
catgtggctgaccccacccgactgttgacccccaacgacgaactagatttagaagcccgt
aagcgcagcaccagtctttacctccccacgggcatgatttccatgtttccgccggcattg
gccacggggcccatgagcttactccagggccagcggtgcgtagccctcagctttggggtg
attttagacgaagtcggagcggtgagggattttaccattgcccccagttgggtaaagccg
acctatcgcctcacctatgaggatgtggacgaaatgttggtgctgaaaatccaaggggaa
ccggaattgcccctactggcagaagcggctaaaaaacgggcccaatggcgtaaatcccag
ggggccatcaccatcaaaatgccggaagccatcatcaaggtcaacgctgacgaagaagtg
caaatatatctccaggaaacctctgtttctcggcaactggtggcggaaatgatgatccta
gccggggaggtggcgggccgtttttcccaagagcatggcattccggtgccatttcggggc
caaccccaaccagaattgccttccgatgaggagttattatctttgccgccaggccctgtg
cgggaatgtgcggtgcgccgttgtatgccccgtagtgaggtaggtattacccccagtcgc
catgccagtttggggttagacctctattcccaagccacttcccccatccgtcgctacacc
gatttgattacccattttcaaattaaggcctatctgcggggggaacctttgcccttctct
ggggaacaagtacaggaaattttatatagcgttatgccctcttctaaggaagccaccctg
gtagaacggcaaactaaccgctactggagcttggaatttctgcggcgcaacatcaatgag
gtctggcagggagtaatgctccgttggttacgggaggatgatggtctggggttaattctc
ctggaagagttgggactggaactcccccaccggtttgaccgccccatttcccctggcgat
cgcctgagcttgaaagttagtaatgccgatccccatcgggacgaaattcgttttcgggaa
ttgctggctaacgaagcctaa
DBGET
integrated database retrieval system
