Synechocystis sp. PCC 7338: HTZ78_05545
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Entry
HTZ78_05545 CDS
T10297
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
synh Synechocystis sp. PCC 7338
Brite
KEGG Orthology (KO) [BR:
synh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
synh03016
]
HTZ78_05545
Enzymes [BR:
synh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HTZ78_05545
Transfer RNA biogenesis [BR:
synh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HTZ78_05545
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
KhtT_N
Motif
Other DBs
NCBI-ProteinID:
QUS60188
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Position
1140557..1142557
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AA seq
666 aa
AA seq
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MEKGKLIEFRHQGERRLAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPGGPYTTDDL
PSFLGEVEPYLDPSSLEVAWELLVEDGESITPADLALLLFSGQNPSQCYAAHALLAEDKL
YFKQKGDRYEPRPSVQIEEIKHQMQVQAQKEEEQQGFIDRVNQVLVGETVTWQGSDRLRL
EALEKFILFPDQNHRQALDILQSLGKPGRTDETQNLLIELGIWQRHENLFLRRSAYPNQF
PAKVSDVAHAYLTNPPPDPDQERLDLTGLKTYTIDDESTSEIDDGLSVETLADGGHRLWI
HVADPTRLLTPNDELDLEARKRSTSLYLPTGMISMFPPALATGPMSLLQGQRCVALSFGV
ILDEVGAVRDFTIAPSWVKPTYRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQ
GAITIKMPEAIIKVNADEEVQIYLQETSVSRQLVAEMMILAGEVAGRFSQEHGIPVPFRG
QPQPELPSDEELLSLPPGPVRECAVRRCMPRSEVGITPSRHASLGLDLYSQATSPIRRYT
DLITHFQIKAYLRGEPLPFSGEQVQEILYSVMPSSKEATLVERQTNRYWSLEFLRRNINE
VWQGVMLRWLREDDGLGLILLEELGLELPHRFDRPISPGDRLSLKVSNADPHRDEIRFRE
LLANEA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaaggcaaactaattgaattccgacatcaaggagaacggcggttggcggtggtc
gatcgcccggacggtaaaaaggattgggtggtcatcgaccaacaggggcaaagccataaa
ctaaagccccagcgggtggagtacgaaattcccggcggcccctataccaccgacgatttg
cctagttttttaggggaagtggaaccttatctcgacccttctagtttggaggtggcctgg
gaattgttagtggaagatggggaaagcattaccccggcggatttagccctactattattt
tctggccagaaccccagccaatgctatgccgcccatgccctgctagcggaagataagctc
tacttcaaacaaaaaggcgatcgttacgaaccccgccccagcgttcaaatcgaagaaatt
aaacaccaaatgcaggtgcaagcccaaaaagaagaggaacaacagggctttattgaccgg
gtgaaccaagtcctagtcggagaaaccgtaacttggcaagggagcgatcgcctacggcta
gaggccctggagaaattcatccttttcccagaccaaaaccatcgccaggccttggatatt
ttgcaaagccttggtaaacccggccgcaccgacgaaacccaaaacctcctgatagaatta
ggcatctggcaacgccatgaaaatctctttttgcgtcgtagtgcttaccccaaccaattc
cccgccaaggtatctgatgtggcccatgcttacctaaccaatcctccccccgaccccgac
caagaacgcctcgatctaaccggcttgaagacctacaccattgacgatgaaagcacttcg
gaaattgatgacggcctgagcgtggaaaccttggcggacggcggccatcggctttggatc
catgtggctgaccccacccgactgttgacccccaacgacgaactagatttagaagcccgt
aagcgcagcaccagtctttacctccccacgggcatgatttccatgtttccgccggcattg
gccacggggcccatgagcttactccagggccagcggtgcgtagccctcagctttggggtg
attttagacgaagtcggagcggtgagggattttaccattgcccccagttgggtaaagccg
acctatcgcctcacctatgaggatgtggacgaaatgttggtgctgaaaatccaaggggaa
ccggaattgcccctactggcagaagcggctaaaaaacgggcccaatggcgtaaatcccag
ggggccatcaccatcaaaatgccggaagccatcatcaaggtcaacgctgacgaagaagtg
caaatatatctccaggaaacctctgtttctcggcaactggtggcggaaatgatgatccta
gccggggaggtggcgggccgtttttcccaagagcatggcattccggtgccatttcggggc
caaccccaaccagaattgccttccgatgaggagttattatctttgccgccaggccctgtg
cgggaatgtgcggtgcgccgttgtatgccccgtagtgaggtaggtattacccccagtcgc
catgccagtttggggttagacctctattcccaagccacttcccccatccgtcgctacacc
gatttgattacccattttcaaattaaggcctatctgcggggggaacctttgcccttctct
ggggaacaagtacaggaaattttatatagcgttatgccctcttctaaggaagccaccctg
gtagaacggcaaactaaccgctactggagcttggaatttctgcggcgcaacatcaatgag
gtctggcagggagtaatgctccgttggttacgggaggatgatggtctggggttaattctc
ctggaagagttgggactggaactcccccaccggtttgaccgccccatttcccctggcgat
cgcctgagcttgaaagttagtaatgccgatccccatcgggacgaaattcgttttcgggaa
ttgctggctaacgaagcctaa
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