Synechocystis sp. PCC 7338: HTZ78_16960
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Entry
HTZ78_16960 CDS
T10297
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
synh Synechocystis sp. PCC 7338
Brite
KEGG Orthology (KO) [BR:
synh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synh03400
]
HTZ78_16960 (sbcC)
DNA repair and recombination proteins [BR:
synh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HTZ78_16960 (sbcC)
Archaeal homologous recombinant proteins
HTZ78_16960 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_15
Rad50_zn_hook
AAA_29
ABC_tran
AAA_21
cobW
Phage_GP20
RsgA_GTPase
DUF5446
Motif
Other DBs
NCBI-ProteinID:
QUS62181
LinkDB
All DBs
Position
3632878..3635898
Genome browser
AA seq
1006 aa
AA seq
DB search
MVPQQLILKNFLSYQNVSLDFRGLHTACICGANGAGKSSLLEAITWAIWGKCRAESEDDV
LHNGTDQVRVDFQFISNNQTYRIIRSRQRGRSSVAEFQIKSGDNFLTLSAKGLRATQEKI
TSTLKLDYETFVNSAYLRQGRADEFMLRKPSERKQILADLLKLDQYELLATRAKDISKEA
KGKINILNERLQILEQDLNQRPDVVANQVKLTEEITAVQAQQEQTQWQLQQLQTSQNQRQ
QWQKQAEWQQRQCQELTTEIARLQNQNGEIAQQCQNLELLLEQEVVIQINFQRYQTLQSQ
EGELAKDFQQYQNLQQQRQDLEQQLQRQENELARQAEQQLLRLEHLDKQLAELQPILAQQ
QDIEAELGKLKAAKQKLSQLDKLQHQVAPLLQRRFALHADLEKARAQCQAQLEQRLAIAK
QLQMAIAAIPDQRRAFQALDEEISQLKNKQVYLKRVEEKGQERGHFKERLQENQRLFEKQ
LRELEQKLSLLDIPGATCPLCEQGLDGHYHQQVIEKTEHQCQELRNQIWILKEQITLADQ
ELAILRNEYREIADGLSNLEQLLQHYGQMEAELEKSGENHERLVELNEQIDDLELSLSQG
TFAESLQLELIVLERELTSLAYDEQTHALARSMVDQLRKGEIRHAKFKEAQAKHRQLMAD
RPGLEEKLLALRSQLQSLGTSSPLRQQWQQVEAALSQLNYNSETHQQLLAELRRQQPWQL
RHQELEQARKQLPMLVQRAQEYRDLIGDRQQALGKRHRELAQLEEQISQYADHGEQIQFL
EQELGQRRQQLDNLLAKKGGLEQLLIQIDTLQGEYEETKQQFNQAQKQFRIHEELSKAFG
KNGIQAMMIENILPQLEAETNYILARLTGNQHHIQFVTQKEGKSSTKRKPKMIDTLDILI
ADAQGTRPYETYSGGEAFRINFSIRLALAKLLAQRSGTALQLLIIDEGFGTQDADGCDRL
VAAITAIASDFACILTVTHMPQFKEAFQQRIEVNKTEFGSQLAIVS
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggtgccccaacaattaattttaaaaaatttcctcagttaccaaaatgttagtctagat
ttccgcggcctacacacagcctgtatttgtggggctaatggagcaggtaaatcatctttg
ttggaggctattacttgggcaatttggggtaagtgtcgagccgaaagtgaggatgatgta
ctccataatggcaccgatcaggtaagggtagattttcaatttattagtaataaccaaacc
tatcgaattattcgcagtcgtcaacggggccgcagtagtgtagcagaatttcaaattaaa
agcggcgataatttccttaccctttcggctaaaggactcagagctacccaggaaaaaatt
accagcaccctaaaattagattacgaaacctttgtcaattctgcctatctgcgccaggga
agagctgatgaatttatgttgcgtaagcccagtgaacgtaaacaaattctggcagactta
ttaaagttagaccagtacgaattactggcaactagggcaaaggatatttccaaggaagcc
aagggtaaaattaatattcttaatgaacgcttgcaaatattggagcaggatttgaaccaa
cgaccagatgtggtagctaatcaagtaaaattaaccgaagaaattacagcagtccaggct
caacaagaacagacacagtggcagttgcaacagctacaaactagtcaaaatcaacgacaa
caatggcaaaagcaagctgaatggcaacaacggcaatgtcaggaattaaccaccgaaatt
gctaggttacaaaaccagaatggggagattgctcagcaatgtcaaaatctagaattattg
ttagaacaagaagtagttatccaaattaattttcagcgttatcaaaccttacaaagccag
gaaggagaattagctaaagactttcaacaatatcaaaatttacaacagcaacgacaagat
ttagagcaacagttacaacgccaagaaaatgaattagcacgacaagcagagcaacaactt
ctgcgcttggaacatctggataaacaactggctgaattgcaacctattttggctcaacag
caggatattgaagcggagctaggcaagctaaaagccgccaaacaaaaactaagtcagctt
gataaactccagcatcaagttgccccccttttacaacgacgttttgccctacatgctgat
ttagaaaaggccagggcccagtgtcaggcacaactagagcaacggctggcgatcgccaaa
caattgcagatggccattgctgccatccccgaccaaagaagagcttttcaagctttggac
gaggaaatttcccaactgaaaaataaacaggtttaccttaaacgagtagaggaaaagggc
caggaacggggtcatttcaaagaacgactccaagaaaatcaaaggttgtttgaaaaacag
ttacgggaattagagcaaaaactaagtttgttagatattcctggggcaacttgtcccctg
tgcgaacagggtttagatggccattatcaccaacaagtaatcgaaaaaactgagcatcaa
tgtcaagaattacgcaatcaaatttggattctgaaggaacaaattacccttgccgatcaa
gaactagccattctccgcaatgaatatagagaaattgccgatggtctaagcaatctagaa
caattgctacaacattatgggcaaatggaagcagaattagaaaaaagtggagaaaatcat
gagcgattagtagagttaaatgagcaaatcgatgacttagaactgagcttaagccaagga
acttttgccgaatcgctacaattggaattaattgttctggagcgggaattaactagtttg
gcctacgacgaacaaacccacgcattggcccgttctatggtggatcaactgagaaaaggg
gaaatccgccacgctaaatttaaagaagcccaagccaaacatcgacaactaatggctgat
cgccctgggttggaggaaaaattgctggcattacgttcccaattacaaagtttgggcacc
agttcccccctgcgtcaacaatggcaacaggtagaagccgctctatcccaactgaattac
aacagcgaaacccaccaacaattattggcggaattacgtcgtcaacagccttggcaattg
cggcaccaagaactagaacaggctcggaaacaattacccatgctggtgcaacgagcccag
gaataccgagatctcattggagatcgccagcaggccctagggaaaagacatagggaattg
gctcagttagaggaacaaattagtcaatatgcagaccatggggaacaaattcaatttttg
gagcaggaattagggcaaagaagacaacagttggataatctactggccaaaaaaggtggt
ttagagcaattattaatccagattgacactttgcagggggaatatgaagaaaccaaacag
cagtttaaccaagcccaaaaacaatttcgtatccatgaagagttgagcaaagcctttggt
aaaaatggtattcaagccatgatgattgaaaatattttaccccagctagaagcagaaacc
aattacattttggcacggttaacggggaaccaacaccatattcaatttgtcacccaaaaa
gaaggaaaaagtagtacaaaacgtaagcccaaaatgattgataccctggatattctcatt
gctgatgcccagggtacccgtccctatgaaacctactccggcggagaagcttttcggatt
aatttttccattcgtttggccctggcaaaattattggctcaacggtctggcaccgcttta
cagttactaatcattgacgaaggttttggtacccaagacgctgacggctgtgatcgccta
gtggccgccatcactgccattgcctccgactttgcttgtattttaactgtcactcatatg
ccccagtttaaggaagctttccaacagcgcattgaagtgaataaaaccgaatttggctcc
caattggccattgttagttag
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