Synechococcus sp. KORDI-100: KR100_00795
Help
Entry
KR100_00795 CDS
T03344
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
synk
Synechococcus sp. KORDI-100
Pathway
synk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
synk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KR100_00795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synk03400
]
KR100_00795
DNA repair and recombination proteins [BR:
synk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KR100_00795
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KR100_00795
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
AAA_29
RsgA_GTPase
AAA_16
nSTAND1
AAA_21
nSTAND3
NACHT
AAA_33
AAA_22
DnaJ_CXXCXGXG
ATPase
AAA_18
Viral_helicase1
MeaB
cobW
BCA_ABC_TP_C
DUF87
Motif
Other DBs
NCBI-ProteinID:
AII41944
LinkDB
All DBs
Position
complement(141374..144346)
Genome browser
AA seq
990 aa
AA seq
DB search
MGRVAANFADRPVPIQVSGSDSDDVIRVRGARQHNLKDVDVTIPRNRMVVFTGVSGSGKS
SLAFDTIFAEGQRRYVESLSAYARQFLGQVDKPDVDAIDGLSPAISIDQKSTSHNPRSTV
GTVTEIQDYLRLLFGRAGEPHCPKCDRSIKPQSIDEMVDQILLLPEGTRYQLLSPVVRGK
KGTHSKLISGLAAEGFARVRINGDVRELSDNIELDKNHIHNIEVVVDRLVSREGIQERLT
DSLRTALKRGDGLALVEVVPKTGEELPEGIDRERLYSENFACPEHGAVMEELSPRLFSFN
SPYGACQACHGIGHLRRFTKERVIPDPSQPVYAAVAPWSDKDNSYYFSLLYSVGEAFGFE
IKTPWNELTDEQRDVLLHGSREPILIQADSRYRKGKGGYTRPFEGILPILERQLRDASGE
AIRQKLEKYLELVPCEACDGQRLRPEALAVRVGPYRITELTAVSVSETLERIERLMGVGA
FEGEEPQLSSRQMQIGDLVLREIRLRLRFLLDVGLDYLSLDRPAMTLSGGEAQRIRLATQ
IGAGLTGVLYVLDEPSIGLHQRDNDRLLSTLMRLRDLGNTLVVVEHDEDTIRAADHLVDI
GPGAGVHGGHIVAEGSVDDLLSSEASLTGAYLSGRRSIPTPAERRNTTTRKLQLIDCNRN
NLRNLSVEFPLGRLVAVTGVSGSGKSTLVNELLHPALENGLGLKVPFPNGLGELRGLKSV
DKVIVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATVEAKARGYQVGQFSFNVKGGRCES
CRGQGVNVIEMNFLPDVYVQCDVCKGARFNRETLQVKYKGYTIADVLQMTVEQAAEVFDA
IPQAADRLRTLVDVGLGYVKLGQPAPTLSGGEAQRVKLATELSRRATGKTLYLIDEPTTG
LSFYDVHKLMEVMQRLVDKGNSIICIEHNLDVIRCSDWIIDLGPEGGDRGGEVLATGTPE
EVAQHPTSHTGRYLRRVLEQHPPEIPSIAA
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggggcgagttgctgccaatttcgctgatcgtccggttccgatccaggtcagcggcagt
gattcggatgatgtgatccgtgtacgaggggcgcgtcagcacaacctcaaggacgtcgac
gtcaccatcccccgcaacaggatggtggtgttcacaggggtcagcggcagcggcaagagt
tccctggccttcgacacgatctttgccgagggacaacgccgctacgtcgaaagtctgtcg
gcctatgcccgccagttcctcggccaggtggacaagccggatgtcgatgcgatcgatggc
ctctccccggcgatttcaatcgatcagaaatccacgagtcacaacccccgctccacggtc
gggacagtcaccgaaatacaggactatctccgccttctgttcggacgtgcaggagagccc
cactgccccaagtgcgatcgctcgatcaagccccagagcatcgacgagatggtcgatcag
atcctgttgcttcccgagggaacgcgttaccagttgctctcacctgtggtgcgaggcaag
aagggaacccacagcaaattgatcagtggactggcggcggagggtttcgctcgcgtgcgg
atcaacggggatgtgcgtgaactgtcggacaacatcgagctcgataagaaccacattcac
aacattgaagtggttgtggatcgtctggtgtcccgtgagggaatccaggaacgactgacc
gactcgctgcgaacggccttgaaacgcggggacggtctggcgcttgtggaggtggttccc
aaaacaggcgaggagctgccggagggcattgatcgcgagcgtctgtattccgagaacttc
gcctgcccggagcacggcgctgtgatggaggagttgtctccccgtctgttttcgttcaac
agtccctacggcgcctgccaggcctgtcatggaatcggacatctgcgtcgatttaccaag
gaacgggtcatccccgatccctcccagcctgtgtatgccgctgtggctccctggagcgac
aaggacaacagctattacttctcccttctttattccgtgggagaggctttcggctttgaa
atcaaaaccccatggaacgagctcaccgatgagcagcgggatgttcttctccatggcagc
cgcgagccgatcctgatccaggcggacagtcgctacagaaaaggcaaaggcggatacacc
cgcccgtttgagggaatcctgccgatcctcgaacggcagctcagggatgccagtggtgag
gcgatccgccagaagctcgagaagtatctcgagctggtgccctgtgaagcctgcgacggc
cagagactgcgaccggaagcactggcagtgcgcgtcggtccctaccggatcacagaactg
acggcggtcagtgtgtccgaaacccttgaacggattgaacgcctcatgggggttggagcg
tttgagggagaggaacctcagctcagttctcgacagatgcagatcggagatctggttctc
agggaaattcgcctgcgccttcgctttctcctggatgtcggcctcgactatctcagtctt
gaccgtccggcgatgacgctgtcagggggtgaagctcagaggatccgactggcgactcag
attggtgctggtctcacaggggttctctacgttcttgatgaacccagcatcggcctgcac
caacgcgacaacgatcgcctgctgagcactctgatgcgcctgagagatctgggaaacacg
cttgtggtcgtcgagcatgacgaagacacgatccgggccgccgatcaccttgtcgacatc
ggtccaggtgctggtgttcatggcggtcacatcgtcgcggaggggtcggtggacgatctg
ctgtcgagtgaggcctccctcacgggtgcctacctcagtggtcgccgctcgattcccacc
ccggcggaacggcgcaacaccaccacccgcaaactgcagttgatcgactgcaatcgcaac
aaccttcgcaatctgagcgtcgaatttccgctgggtcgcctcgttgcggtgaccggcgtc
agcggcagcggcaagagcaccctcgtgaatgagctgctgcatcctgctcttgaaaacggc
ctgggactgaaagttccgtttccgaacggtcttggggagctgcgcggcctcaaatccgtc
gacaaggtaatcgtgatcgaccagagcccgatcggtcgtacgcctcgatcaaacccggcc
acctacaccggagccttcgatccgatccgtcaggtgtttgcggccactgttgaagccaag
gcacgtgggtatcaggttggccagttcagcttcaacgtcaaaggcgggcgctgtgagtcc
tgtcgagggcagggcgtgaatgtgatcgaaatgaattttcttcccgatgtctacgtccag
tgcgacgtctgcaagggcgcccggttcaaccgcgaaaccctgcaggtgaaatacaagggt
tacaccattgcggatgtgctccagatgacggtggagcaggccgctgaggtgttcgatgcg
attcctcaggcagcagatcgtctgcgcacgctggtggatgtgggcctgggttacgtcaag
ctcggtcagccggcgccgaccctgtcaggtggtgaagcccagagggtgaagctcgcgacg
gaactgtcgcgtcgcgccaccggaaagacgctgtatctgatcgacgaacccaccaccggt
ctgagcttctacgacgtgcacaagctgatggaggtgatgcagcggttggttgacaaggga
aattccatcatctgcatcgagcacaatctcgatgtgattcgttgttccgactggatcatt
gatctcggtccggaaggcggtgatcggggcggagaggttctggcgacgggcacaccggag
gaggtcgcccagcatccgaccagtcatacaggccggtatctccgccgcgtgttggagcag
catccacccgagattccttcaatcgccgcctga
DBGET
integrated database retrieval system
