Synechococcus sp. KORDI-100: KR100_07365
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Entry
KR100_07365 CDS
T03344
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
synk
Synechococcus sp. KORDI-100
Pathway
synk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR100_07365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synk03019
]
KR100_07365
03009 Ribosome biogenesis [BR:
synk03009
]
KR100_07365
Enzymes [BR:
synk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KR100_07365
Messenger RNA biogenesis [BR:
synk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KR100_07365
Ribosome biogenesis [BR:
synk03009
]
Prokaryotic type
rRNA helicases
KR100_07365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
AAA_30
CMS1
B12-binding
Motif
Other DBs
NCBI-ProteinID:
AII43180
UniProt:
A0A076H0F1
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All DBs
Position
1332120..1333835
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AA seq
571 aa
AA seq
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MVASTDSEPSSTAEAASSGFDGFGFSQALLDTLAAKGYSEPSPIQRAAFPELMLGRDLVG
QAQTGTGKTAAFALPLLERLQEGSKRPQALVLAPTRELAMQVADSFKAYAAGHPQLKVLA
VYGGSDFRSQIQALRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFID
DVEWILEQLPEERQVVLFSATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVP
MSHKLESLRRVLDACGSEGVIIFARTKAITLTVAEALEVAGHQVAVLNGDVPQSQRERTV
ERLRGGTVDILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLF
VSPRERRFISNLERATGQPIEPMEIPGNAAINQGRLDRLRLRLSEAARNGRPSEEETALL
KELIQRIGTELEMTPDQLALAALGLAIGPAPLLCQGDEEWIQQAMAGGLRRRERGERGDR
DRRRSDRPSRPPEDHMQRYRVEVGHRDRVKPGNLVGAIAGETGLQGRMIGRIQIFDNHSL
VDLPKGMPEDVFNNLRRLRVMNRELQISQAS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
gtggttgcatccactgacagtgaaccgtcttcaactgcagaggcagcgtcatccggattt
gatggctttgggttcagtcaagccttgctcgacacccttgccgccaagggctacagcgaa
ccgtccccgatccagcgggcagcctttcccgagctgatgctgggccgggatctggtcggt
caggcccagaccggcaccggcaagacggcggcctttgccctgcccctgctggagcggctc
caggagggctccaaacggccccaggccctggtgttggcacccacccgcgaactggcgatg
caggtggccgactcattcaaggcctatgccgcaggccatccccagctcaaggttctcgcg
gtgtacggcggttccgatttccgctcccagatccaggccctgcgccggggcgtcgatgtc
gtggtggggacacccggtcgggtgatggatcacatgcgtcagggaacgctcgacaccagc
ggtctgcgcagtcttgtgctcgatgaagccgacgagatgctgcggatgggcttcatcgac
gacgtcgagtggattctcgagcagttgcccgaggagcggcaggtggtgctgttctccgcg
acgatgccgcccgagatccggcggttgtcgaagcgttacctgaaggaccctgcggaggtg
acgatccgcaccaaggatcaggaaggcaaacggatccggcagcgctcgatcacggtgccg
atgagccacaagctcgaaagcctccgccgtgtgctcgatgcctgcggcagcgaaggtgtg
atcatctttgcccgcaccaaggcgatcaccctcacggtggccgaggccctggaggtggcc
ggccatcaggtggcggtgctcaatggtgatgtgccccagtcccagcgcgaacgaacggtg
gagcgcctgcgcggcggcaccgtcgacatcctcgtggccacggatgtggcggcacgcggc
cttgatgtcgatcgcatcggactggtgatcaactacgacatgccgttcgacagcgaggcc
tacgtgcaccgcatcggccggacgggacgggcaggccggaccggggaagcggtgctgttc
gtctccccccgggagcgacgcttcatcagcaacctcgaacgggccaccggtcagccgatc
gagccgatggagatcccgggaaatgcggcgatcaaccagggacgcctcgatcgcctgcgc
ctgcgtctcagcgaagcggcccgcaatggccgtcccagcgaggaggaaaccgcgctgttg
aaggagctgatccagcgcatcggcaccgagctggagatgacgcccgaccagctggctctg
gcagccctcgggctggccatcggtccggcgccgctgctttgccagggggatgaggagtgg
attcagcaggccatggccggtggcctgcgccgccgtgagcggggggagcgtggcgatcgc
gatcgacgtcgttcggatcgtcccagccgtccgccggaggatcacatgcagaggtatcgg
gtggaggttggccaccgcgatcgggtgaagcccggcaatctcgtcggagcgatcgccgga
gagacgggcctgcaggggcgcatgatcggccgcatccagatcttcgacaatcacagcctc
gtcgatctgccgaaagggatgcctgaggatgttttcaacaacctgcggcgcttgcgggtg
atgaaccgtgagctccagatcagtcaggccagttga
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