Synechococcus sp. KORDI-100: KR100_08520
Help
Entry
KR100_08520 CDS
T03344
Name
(GenBank) hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
synk
Synechococcus sp. KORDI-100
Pathway
synk03410
Base excision repair
synk03430
Mismatch repair
synk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
synk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KR100_08520
03430 Mismatch repair
KR100_08520
03440 Homologous recombination
KR100_08520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synk03400
]
KR100_08520
DNA repair and recombination proteins [BR:
synk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KR100_08520
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KR100_08520
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KR100_08520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AII43403
UniProt:
A0A076H2M3
LinkDB
All DBs
Position
complement(1562595..1564556)
Genome browser
AA seq
653 aa
AA seq
DB search
MQARPLIAEHNAVRQGRSLPQTLSETKHSWIWSLPAVIEPDPLSGCDLSLPLRCLLMRRG
IKTVQEAFDLLDPPALPDPSTQFPDLRAAVERISRACREQEALAICGDYDADGMTSSALL
LQALTPLGARPTVAIPSRSDDGYGLNPRMVQELHDSGIRVLITVDNGVSARKALELASEL
AMEVIVTDHHTIPEERPPMAALIHPATTPQTSPYRGLAGVGLAYVLALAVAEDLQRPEAI
RSARDLFCIGTVADMAPLQGANRRWLHEGLRHLHRTDCAGLKALQRLAGLDDRPLRSDDI
GFQIAPRINAVGRLGEPSLVVDLLTSVDADVAMGLARRCDDYNRQRRDLCDAIEAEAVAL
IEADTGGLPPFLLLAQSHWHHGVIGIVAARLVERYHRPAALLAGEGNGMLRASVRAPKGF
AVDAALKACHTLLDRYGGHPAAGGFTVVAAHVSALHAQLNDLAQHWLSGAGEGLPVQPEA
LLRLSQIDWELWSELQKLEPFGVGNEAPLFWARDCAVLNSRLLSGGHLSLTLSQDDVQRR
AIAWRWRSEEALPERCDVAFTIGMNRWKGETRVQLELKALRQHSECIDLVRGDHRYNARR
VSETGLAVRNDEGQEICAEIKPGSTLISNDPLARHPMVLQLLEEASLGLGLRP
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccagaccgttgattgcagagcacaatgctgtccgacagggccgctccttgccc
caaacgttgtctgaaaccaagcattcctggatctggtcccttcccgcagtcatcgagccg
gatcccctgtcgggatgcgacttgtcgttacctctgcgttgtctcttgatgcggcgaggc
atcaagaccgtacaggaggccttcgatctgctcgatccaccggcacttccggatccgagc
acgcagttccctgatctcagagcagcggtcgagcgcatcagccgtgcttgcagagaacag
gaggctctggcgatctgtggtgattacgacgccgatggcatgacgagcagtgcccttctg
ctgcaggcactgaccccgttgggggccagaccgaccgtggcgattccatcgcggagtgat
gacggctacgggctgaatccacgcatggttcaggagctgcatgactccggcatcagggtt
ctgatcaccgtcgacaacggcgtttcagcgcggaaggcactcgaactggccagcgagctc
gccatggaggtgatcgtcacggaccaccacaccatccctgaggaacgcccgccgatggcg
gcgctgattcatccggccacgacaccccaaacctcgccctatcggggtctggccggcgtg
ggacttgcctatgtgctggcattggcggtcgcagaggatctgcaacgaccagaagcgatc
cgctcagcaagggatctgttctgcatcggcacagtggccgacatggccccgttgcagggg
gcgaatcgacgctggctgcatgagggactgagacatctgcaccgcacggactgtgctggg
ctcaaagcccttcagcgactggctggactggacgatcggcccttgcgcagcgacgacatc
ggttttcagatcgcccctcggatcaatgcggtcgggcgtctcggggagcccagtctggtg
gtggatcttctgacatccgtggatgcggatgtcgccatggggctggcacgacgctgcgat
gactacaaccgtcagcgacgggacctttgcgatgcgatcgaagccgaggccgttgctctc
atcgaagcggacacgggggggctgcctccctttctgctgcttgcccagtcccactggcat
cacggcgtcatcggcattgtcgcggcacgtcttgttgagcggtaccaccggcctgcggcc
ctactcgccggtgaagggaacggcatgttgagggcatcggtgcgagcaccgaagggcttt
gccgttgatgctgctctcaaggcttgccacacgctcctggaccgctacggagggcatccc
gctgccggtggtttcaccgtggtcgctgcccatgtcagtgcactgcatgcgcagctgaat
gacctggcgcagcactggttgtccggcgccggagaggggctcccagttcagccggaagcc
ctcctacgtctctcacagatcgactgggaactctggagcgagctgcagaagcttgaaccc
tttggtgtcggcaacgaagcgcccctgttctgggcgagagattgcgcagttttgaactcg
cgccttctcagtggtggccatctctctctcacactcagtcaggacgatgttcaacgacgc
gccatcgcctggcgctggcgcagcgaggaggcgttgccggaacgctgtgatgttgcgttc
accatcggaatgaaccgctggaagggtgaaacccgtgtgcaacttgagctgaaagcgctc
aggcagcacagtgaatgcattgatctggtgcgcggcgatcaccgctacaacgcccgtcgc
gtctcagaaacagggcttgctgttcgtaatgatgaaggtcaggagatctgcgcggagatc
aaaccgggatcaaccctgattagcaacgaccctctcgctcgccacccgatggtgcttcaa
cttcttgaggaggcctctctcggtcttggactgagaccttga
DBGET
integrated database retrieval system