Synechococcus sp. LA31: KJJ24_05495
Help
Entry
KJJ24_05495 CDS
T10468
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
synl Synechococcus sp. LA31
Pathway
synl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
synl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KJJ24_05495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synl03400
]
KJJ24_05495 (mfd)
Enzymes [BR:
synl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KJJ24_05495 (mfd)
DNA repair and recombination proteins [BR:
synl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KJJ24_05495 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_30
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QVV68584
LinkDB
All DBs
Position
1019804..1023361
Genome browser
AA seq
1185 aa
AA seq
DB search
MPLTALVRQLQQAPLTGEVLQRSQRNERLRMSGAGRGARALVSSALATAAEAPLLVVVPT
LEEAGRWAALLELMGWSSAQLYPTSEGSPYEPFDPTSEITWGQLQVLSELLDEERASKMA
IVATERALQPHLPPPAALNAQCLSLRKGDTVDLEELGETLTRLGYERVTAIEQEGSWSRR
GDIVDVFPVSAELPVRLEFFGEELEKLREFDPASQRSLDPIEVVRLTPSGYGPLIADGLR
EGMPDGLDQLLSPEALEQLLEGGTPEGMRRLMGLAWSEPASLLSYLPANTLIAVDERRHC
LAHGQQWFDHASDHHSEVSEELGVALPASLHQAPELALASTDAFAGFDLAELHESDQHPN
SFDLASRPVPAYPNQFGKLAELIKGFQREKARVWLLSAQPSRAVALLEEHDCITRFVPNP
GDQASIERLIEQNTPVALKTKGTAELEGLQLPAWKLALISDREFFGQQSLTATGYVRRRR
KAASRTVDPNKMRPGDFVVHRNHGIGKFIKLEKLAISGESRDYLVVQYADGLLRVAADQL
GSLGRYRATTEQPPDLNRMGGTAWSKAKERARKAVRKVALDLVKLYAERHQAAGFCFPAD
GPWQSELEESFPYEPTPDQLKAIADVKRDMEKHQPMDRLVCGDVGFGKTEVAIRAIFKAV
TAGKQVAMLAPTTVLAQQHWRSLSERFAPYPIKVNLLNRFRTASERKAIQEGLGEGTVDV
VVGTHQLLSKNTTFKQLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMS
LSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIRQELDRGGQIFYVVPRVEGIEDVA
AGLRSMIPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLCTTIVESGLDIPRVNTILIE
DAHKFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSDAARQRLRAIQEFAQLGSGYQLA
MRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQGQDIPAVDDTQIDLPITAF
IPGDWIADNDEKMAAYRAAADCGSPEALLQLATDWVDRYGAIPAPVISLLQLMELKLLAK
RCGFSRIKPDKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQAGSGSTAKVLARGLGVL
PMEKQVEELMAWLKQMAEQIPGSDGLTDAQRAEQIKAKNEAVVAV
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcaccgccctggtgcgccagctgcagcaggctccgctcaccggtgaagtgctg
cagcgcagccagcgcaacgagcggttgcggatgagcggagcgggacgaggcgcgcgggcc
ctggtgagcagtgccctggccacggccgccgaggcaccgctgctggtggtggtgccaacc
ctggaggaggcgggccgctgggcagcgctgttggagctgatgggctggagcagcgcccag
ctgtatcccaccagcgaaggcagcccctacgaaccgttcgatcccacaagtgaaatcacc
tgggggcagctgcaggtgctcagcgagctgctggatgaggagcgtgcctcgaagatggcc
atcgtggccaccgagcgggccctgcagccgcatctgccgccgccagctgcactaaatgcc
cagtgcctaagcctgcgcaagggcgacacagtggacctcgaagagctgggcgaaaccctc
acccgcctgggctacgagcgcgtcaccgcgatcgagcaagagggcagctggagccgccgc
ggcgacatcgtggatgtgttcccggtgagtgccgagctgccggtgcggcttgagttcttc
ggggaagaactggagaagctgcgggaattcgatcccgccagccagcgctccctcgatccg
atcgaggtggtgcgcctgacccccagcggttatggccccctgatcgccgatggcctgcgc
gaggggatgccggatgggctggatcagctgctcagcccggaggcgttggagcagctgctc
gaaggtggcacccccgaaggcatgcgacggctgatggggttggcctggagcgagcccgct
tccctactcagctatctgccagccaacaccttgatcgcggtggacgagcggcgccattgc
ctggcccacggccagcaatggttcgaccacgccagcgatcaccacagtgaggtgagcgaa
gagctgggggtggcgttgccggcctcgctccaccaggctccggagctagcgctggccagc
accgatgccttcgcgggatttgatctagcggagctgcacgaaagcgatcagcaccccaac
agttttgatctggccagccggccggtgccggcctaccccaatcagttcggcaagctggcc
gagctgatcaagggcttccagcgcgagaaggcacgggtgtggctgctgtcagcccagccc
agccgcgcagtggcgctgcttgaggagcacgactgcatcacccgcttcgtgcccaatccc
ggcgatcaagcctcgatcgagcggctgatcgagcagaacacgccggtggccctcaaaacc
aagggcaccgctgagctcgagggcttgcagctgccggcctggaagctggcgctgatcagc
gaccgcgaattcttcgggcagcagtcgctcaccgccacgggctatgtgcgccggcgccgc
aaggccgctagccgcacggtggatcccaacaagatgcgccccggtgattttgtggtgcac
cgcaaccacggcatcgggaagttcatcaagctcgaaaagctggcgatcagcggcgaatcg
cgcgactacctggtggtgcaatacgccgacggcctgctgcgggtcgccgcagaccaactc
ggcagcctcggccgctaccgggccaccaccgagcaaccgcccgatctcaaccgcatgggc
ggcacggcctggagcaaggccaaggagcgggcccgcaaagccgtgcgcaaggtggcgctg
gatctggtgaagctctacgccgaacgccaccaggccgcgggtttttgcttccccgccgat
ggcccctggcaaagcgaactggaggagtcgttcccctacgaacccacgcccgatcagctc
aaggccatcgccgatgtgaagcgcgatatggaaaaacaccagccgatggaccggctggtg
tgtggggatgtgggcttcggcaaaaccgaggtagcgatccgcgccatcttcaaggcggta
acagcgggtaagcaggtggccatgctggcccccaccacggtgctggcgcagcagcactgg
cgctcactgagtgagcgttttgcgccctatccgatcaaggtgaacctgctcaaccgcttc
cgcaccgcgagcgagcgcaaggcgattcaggagggcctgggggaaggcactgtcgatgtg
gtggtggggacccaccagctgctgagcaagaacaccaccttcaaacagctggggttactg
gtggtggatgaggagcagcgcttcggcgtgaaccagaaggaaaagatcaaggccctgcgc
aaagacgttgacgtgttgaccctgtcggcaacgccgatcccacgcaccctctacatgagc
ctctccggcgtgcgggaaatgagcctgatcaccacgccgccgccgctgcgccgaccgatc
aaaacccacctggccgccctcgatgaagaggccgtgcgcagtgccatccgccaggagctc
gatcgcggcgggcagatcttttacgtggtgccacgggtggaggggatcgaggatgttgcc
gcggggctgcggtcgatgatccccggcctacgcctgctggtggcgcacggtcagatggca
gaaggcgaactggagagcgccatggtggcgttcaatgccggcgaggccgacctgatgctt
tgcaccacgatcgtggagagcggcctcgacattccgcgcgtcaacacgatcctgatcgaa
gacgcccacaaatttggcctagcccagctgtatcaactgcggggccgggtgggccgcagc
ggcatccaggcccacgcctggctcttctatcccggtgatgcctcgctcagcgatgcggcg
cggcaacgcctgcgggccatccaggaatttgcccaactcggcagtggctaccagctggcc
atgcgcgatatggaaatccgaggtgtgggcaacctgttgggggtggagcagagcggccag
atggaaaccatcggcttcgatctctacatggagatgctccaggaatccctggcagagatc
caggggcaagacatcccagccgtcgacgacacccagatcgatctgccgataaccgccttc
atccccggcgactggatcgccgacaacgacgagaagatggcggcttaccgcgccgcggcc
gactgcggcagccccgaggcactgctgcaactcgccaccgactgggtggatcgctatggc
gccatcccggcaccggtgatctcgctgctgcaattgatggagctaaaactgctggccaag
cgctgcggcttctcgcgcatcaaacccgacaaaccaaacatcgctttggaaacgccgatg
gaggagcccgctttccgcctgttgcgccagggcctaccccagcacctgcatggtcggttg
gtgtatcaggcggggtccggcagcactgccaaggtgctggcccgagggcttggggtcctg
ccaatggagaaacaggtggaggagctgatggcctggctcaagcagatggccgagcagatc
cccggttctgatgggctcaccgatgctcagcgcgcagagcagatcaaggccaaaaatgaa
gccgtagttgcagtgtga
DBGET
integrated database retrieval system
