Synechococcus sp. LA31: KJJ24_06915
Help
Entry
KJJ24_06915 CDS
T10468
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
synl Synechococcus sp. LA31
Pathway
synl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJJ24_06915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synl03019
]
KJJ24_06915
03009 Ribosome biogenesis [BR:
synl03009
]
KJJ24_06915
Enzymes [BR:
synl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KJJ24_06915
Messenger RNA biogenesis [BR:
synl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KJJ24_06915
Ribosome biogenesis [BR:
synl03009
]
Prokaryotic type
rRNA helicases
KJJ24_06915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DEDD_Tnp_IS110
B12-binding
HEM4
Peripla_BP_1
Peripla_BP_4
Flavi_DEAD
Transketolase_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QVV69073
LinkDB
All DBs
Position
1279396..1281156
Genome browser
AA seq
586 aa
AA seq
DB search
MDLSAIDLPTPGDDTPAEVSTTVIPAKASGFASFGFAPELLEALTAIGYEEPSPIQKAAI
PELLLGRDLVGQAQTGTGKTAAFALPMLAALDAEQRTPQVLVLTPTRELAIQVADAFKSY
AANMPHLRVLPLYGGSDFRDQIVRLKRGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDE
ADEMLRMGFIDDVEWVLEQLPSQRQVVLFSATMPPEIRRISHKYLNDPAEVTIKTKGADS
SRIRQRFITVNGPQKLEALTRVLESETKEGVIIFARTKAITVTVAEALEAKGYDVAVLNG
DVAQSQRERTIERLKKGTVDVLVATDVAARGLDVDRITLVVNYDIPFDSEAYVHRIGRTG
RAGRTGDAILFVTPRERRFLGGMERAVGRPIEAMEIPSNATINQSRLDRLRQRLCDNLTS
EGRSEEQALLSEIVQRVAQESGASPEQLALAALQLAVGTQPLLVQGDESWIRPNSGGRDG
RDDRGRDRSSPNGQGRRGPREQSGPPESGMERFRIEVGWRDRVKPGNIVGAIANEAGLNG
RSIGRIQIFDAHSLVDLPQGMPDDVFQGLRRLKVMNRELQISRSRD
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
gtggatctcagtgcgatcgatctccccaccccaggcgatgacacgccggcggaggtgagc
accactgtgatccccgccaaggcgtctggcttcgccagcttcggcttcgcgcctgagctg
ctcgaggccctcacggccatcggctacgaggaaccctccccgatccagaaggcagccatc
cccgagctgctgctcggccgcgacctggtgggccaagcccaaacaggcaccggcaaaacc
gcagccttcgccctgccgatgctcgcggccctcgatgccgagcaacgcacgcctcaggtg
ctggtgctcacccccacccgtgagttggccatccaggtggccgatgccttcaagagctat
gcggccaacatgccgcacctgcgcgtgctgcccctttacggcggctccgatttccgcgat
caaatcgtgcgcctcaagcgcggcgtgcagatcgtggtgggcacccccggccgggtgatg
gaccacatgcgtcagggcaccctcgatctctcaggcctgcgcagcctggtgctcgatgag
gccgacgagatgttgcgcatgggcttcatcgacgacgtggagtgggtgctcgagcagctg
cccagccagcgccaggtggtgctcttctccgccacgatgccgcccgagattcggcgcatt
tcgcacaaatacctcaacgatcctgctgaggtcacgatcaaaaccaagggcgctgattcc
agccgaattcgccagcgcttcatcaccgtcaatggtccacagaagctcgaagccctcacc
cgggtactcgagtcggaaaccaaggaaggggtcatcatctttgcccgcaccaaggccatc
accgtcaccgtggccgaagccctcgaggccaagggttacgacgtggccgtgctcaacggc
gatgtggcccagagccagcgggaacgcacgatcgaacgcctcaaaaagggcaccgtggat
gtgctggtggccaccgatgtggccgcccgcggcctcgatgtcgaccgcatcaccctggtg
gtgaactacgacattcccttcgattcggaggcctacgtgcaccgcatcggccgcaccggc
cgggctggccgcaccggtgacgcgattctgttcgtcaccccccgggagcgccgcttcctg
ggtggcatggagcgggcggtgggtcggccgatcgaggccatggagatcccgagcaacgcc
accatcaaccaaagccggctcgatcggctgcgccagcgcctctgcgacaacctcaccagc
gagggacgcagcgaggagcaggccctgctctccgagatcgtgcagcgggtggcgcaagaa
agcggcgccagccctgagcaattggccctcgcggccctgcagctggcggtgggaacgcag
ccgctgctggtgcagggcgacgagagctggatccgcccgaacagtggcggccgcgatggt
cgcgacgatcgcggccgagaccgcagcagccccaatggccaaggccgccgcggtcctcgc
gagcaatccggcccgccggaatccggcatggagcgcttccgcatcgaggtgggctggcgt
gaccgcgtcaaacccgggaacatcgtgggcgccatcgccaatgaagccggtctgaacggg
cgcagcatcggccgcattcagatcttcgatgcccacagcctggtggatttgccccagggc
atgcctgacgacgtgttccaggggctgcgtcgcctcaaggtgatgaaccgcgaactgcag
atcagccgctcccgcgactga
DBGET
integrated database retrieval system
