Synechococcus sp. LA31: KJJ24_08865
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Entry
KJJ24_08865 CDS
T10468
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
synl Synechococcus sp. LA31
Brite
KEGG Orthology (KO) [BR:
synl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synl03019
]
KJJ24_08865 (hrpB)
Enzymes [BR:
synl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KJJ24_08865 (hrpB)
Messenger RNA biogenesis [BR:
synl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KJJ24_08865 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_19
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QVV66618
LinkDB
All DBs
Position
1640220..1642736
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AA seq
838 aa
AA seq
DB search
MALPIEPLLPELVQRLTAGRSVLLQAPPGAGKTTRVPLALLEACSDKILMLEPRRLAAKA
AAERLAGELGETVGERVGYRVRMESRVSAATRIEVLTDGLFLRQLQADPSLSGVGCVIFD
EFHERRCEADLALALLREARELLMPELRLLVMSATLNLQPLVEQLPEAALLTSEGRSHPV
ALSHQQPRERELLHAQVVRALESHWLDQRADGETVLVFLPGQRQIQQTRDAIADTAWGTE
LELCALHGNLPLSEQSNAIRRSRQRAGKVVLATAIAESSLTIEGVSLVIDSGLSRRSRFD
PVSGMESLVTVLSSQASAEQRAGRAGRLGPGRALRLWSPAEQQRRPAFDPPALMEADPAP
LVLQLAQWGAGLGESLPWLEPPPAAHLLEGQELLMQLGALDANGRLNEHGRAMAALGVHP
RLAHLLLRARELGAVGLGCSLAALLGERDPLRQQEAGSDLMRRIDWLRTASRDPRRQQLR
QLTQQLQRQLELLGEAPAAPTEPVAALKEQAIAAELIAHAYPERVALERSPGSGRYLTRS
GRGAQLPPADPLLGSPALAIAAADAASSDARIQLALPLPAASLMALAVVAGSEQGRVSWD
SQQQRIRCERERCLGALVLERRSWPDAPASARRAALLEGLAELGIEALPWDDVSRQLQQR
ICLAHRELGAPWPDRSHAALAADPEGWLGDQLDSIRSRNDLQTLNLEEALWSDLPWEARR
TLDQLLPPTLPIPSGRQARLDYSSGEPVLAVKLQELFGAASTPTVLDGRLPVTVQLLSPA
GRPAAITQDLEGFWSGAYQQVRKELRGRYPRHPWPDDPANTPATALTKRALQRRQSQR
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
gtggccctgccgatcgagccgctgctacctgagctggtgcagcggctcaccgcagggaga
agcgtgctcctccaggcccccccgggagccgggaaaaccacccgggtgccactggcgcta
ctcgaggcctgcagcgacaaaatcctgatgctcgagccccgcaggctggctgccaaggcg
gcggctgagcgcctggccggcgaactcggggaaaccgtgggtgagcgcgttggctaccgg
gtacggatggagagcagggtttcggcggccacgcgcattgaagtgctcacggatggcctg
tttttacgccagctgcaggccgatccaagcctgagtggcgtgggctgcgtgatcttcgat
gaatttcacgaacgccgctgcgaagccgatctagccctggccctgctgcgggaagccagg
gagctgctgatgcctgagctacggcttctggtgatgtcagcaaccctcaacctgcaaccc
ctggtggagcaactgccggaggcggctttgctcaccagcgaagggcgcagccatccggtg
gcccttagtcatcagcaaccgcgtgagcgcgaactgctgcacgcccaggtggtgcgtgca
ttggagagccactggctcgaccaacgggccgatggcgaaacggtgctcgtgtttctgccc
ggccaacgccagattcagcaaacccgcgacgccatcgcagacaccgcctggggaacggag
ctggagctctgcgcgctccacggcaacctgccgctgagcgagcaaagcaacgcgattcgc
cgcagccgccagcgcgccgggaaggtggtactagccacggccatcgctgaaagctccctc
accatcgaaggggtgagcctggtgatcgatagcggtctcagccgccgcagccgctttgat
ccggtgagcggcatggagagcctggtgaccgtgctctccagccaagccagtgccgagcag
cgggcagggcgagccgggcgcctcgggcctggtcgagccctgcgcctatggagcccggcg
gagcagcaacgccggcccgcctttgatccgccggccctgatggaggccgacccggcccca
ctggtgcttcagcttgcccagtggggcgcgggtctaggcgaatccttgccctggcttgag
ccaccaccagccgcccatctgttggaagggcaggagctcctgatgcagcttggcgccctc
gatgccaatggcaggctcaacgaacacggccgtgccatggcagctctcggcgtccaccca
cgcctggcccatctgctactgcgggcacgggagctgggggcggtggggctgggctgcagc
ctggcggccctgctgggggaacgcgatcccttgcgccaacaggaggccggcagtgatctg
atgcgccggatcgactggttgcgcacagccagccgcgatccacgccgccagcagctgcgc
cagctcacccaacaacttcagcgccagctggagttgttgggtgaggcgccagcagctccc
accgagccggttgcggcattgaaagagcaggcgattgcagctgagctgatcgcccacgcc
tatcccgaacgggtggccctggagcgcagcccaggttcggggcgttacctcacccgcagc
ggccgcggtgcccagttaccgccggctgatccgctgctgggcagccccgccctggccatc
gccgccgccgacgccgccagcagcgatgcacgcattcagttggctctccccctgcccgca
gcaagcctgatggcccttgcggttgttgccggcagcgagcaagggcgagtgagctgggac
agccaacagcaacgcatccgctgcgaacgggagcgatgcctgggcgccctggtgctggag
cgccgcagctggccggatgcaccggccagtgcgaggcgggcggccttgctggaggggttg
gcggagctggggatcgaagcgctgccctgggacgatgtcagccggcagttgcagcaaagg
atctgcctggcccatcgggagctgggagctccctggcctgaccgcagccacgccgcactg
gcggcagaccctgaaggctggctgggggatcagctcgacagcatccgcagccgcaacgac
ctccagaccctcaacctggaagaagccctctggagcgacctgccatgggaggcgcggcgc
acactggaccagctcctgccgccaacgctgccgattccatccggccgccaggcccggctc
gattacagcagtggcgagcctgtgctggctgtgaagctgcaggaattattcggagccgca
agcacccccaccgtgctggatggccgcctgccagtcaccgttcaactcctctcaccggcg
ggccgcccagccgcgatcacccaggatttagaagggttttggagcggggcctatcagcag
gtacgcaaggagctaagggggcggtatccccgtcacccctggcccgatgaccctgcaaac
acccccgccactgcactcaccaagcgagccttacagcggcgtcaatcccagaggtga
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