Synechococcus sp. LA31: KJJ24_10025
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Entry
KJJ24_10025 CDS
T10468
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
synl Synechococcus sp. LA31
Pathway
synl03018
RNA degradation
Brite
Enzymes [BR:
synl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KJJ24_10025
Messenger RNA biogenesis [BR:
synl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KJJ24_10025
Ribosome biogenesis [BR:
synl03009
]
Prokaryotic type
rRNA processing factors
KJJ24_10025
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QVV66820
LinkDB
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Position
complement(1835596..1837626)
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AA seq
676 aa
AA seq
DB search
MPQQIVIAEQLRIAAVLTDDRVDELVVAQGRYQIGDVYLGTVENVLPGIDAAFVNIGEGE
KNGFIHVTDLGPLRLKKGTLGITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRFLI
LQPHGQGVNISRRINAESERNRLRALGVLIKPPGAGLLIRTEAEGVSEDLLIDDLEALLR
QWEAIQTAAETATPPVLLNRDEDFIHRILRDHSTLDVARIVLDSPDGVGRVNAFLGADQS
QVVVEQHLDSTEILEAFKVNAAIHDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRS
ANARETVLWTNYEAATEIARQLKLRNIGGVVIIDFIDMESRRDQLQLLEHFTAAIRPDSA
RPQIAQISELGLVELTRKRQGQNIYELFGRACPSCGGLGHVAVLPGKDSLQPLAAAPGLV
RSAASARAEVLSPAAAESSGGRRRRGGRGARGAADAPELISLDDTTTAGLSHEAATTPAE
PSSRRPEPQLVAVPMDAEQELVYGWLGLNPTLLLDPVPAADNLVVRVVRPGEDAEAVLEE
ARQQLAASGPRRRRRGRGANGASSPAPANGHGASAERDTATLPVTVEITPLPVETFPTVP
VLPDSGLELGVASAEPAAEASNGRRVRSRRRNDAPAVGAAAVAVMPAVEEPAANAEAAED
DTGEPRRRRRRSSATE
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagcagatcgtcatcgccgagcagctgcgcatcgccgcggtgctcaccgatgat
cgtgttgatgaactggtggtggcccagggccgctatcagatcggcgatgtgtatctcggt
accgttgaaaacgtgttgccgggcatcgatgccgctttcgtgaatatcggcgaaggcgag
aaaaacggcttcattcacgtcaccgatctcggcccgctgcgcctcaagaaaggcaccctc
ggcatcactgagctgctcgagccccgccagaaggtgctggtgcaggtgatgaaggagccc
accggcaccaagggaccgcgccttactggcaatctcgccctgcccgggcgttttctgatc
ctgcagccccacgggcagggggtgaatatctcccgccggatcaatgccgaaagcgaacgg
aatcgtctgcgtgccctcggtgtgctgatcaagccccctggtgcggggctgttgattcgc
accgaagcggaaggggtcagcgaagacttgctcatcgacgacctcgaagcgctgctgcgc
cagtgggaagcgattcagaccgcagcggaaaccgccacgccgccggttctgctcaatcgc
gatgaagactttattcatcgcatcctgcgcgaccactccaccttggatgtggcacgcatc
gtgctcgacagccctgatggtgttggcagggtcaatgccttccttggggctgatcaaagc
caggtggtggtggagcagcacctggattccacggagatcctggaagccttcaaggtgaat
gccgcgatccacgacgccctcaagccgcgcgtggatctgccctccggcggctacgtgatc
atcgagcccactgaggcgctcacggtgatcgacgtgaactcgggttccttcacccgctcc
gctaacgcacgggaaaccgtgctgtggaccaactatgaggccgccactgaaattgcccgt
cagctgaagctgcgcaacatcggcggcgtggtgatcatcgacttcattgatatggagtcg
cgtcgcgatcaactgcaactgctggagcacttcaccgcagcgattcgcccggattccgca
cgcccccagatcgcccagatcagcgaattgggtctggtggagctcacccgtaagcgccaa
ggccagaacatctacgaactgtttggacgggcttgtcccagctgcggtgggcttggccac
gtggctgtgctgcctggcaaggacagcctgcagcccctggcagcagctcctggcctggtg
cgctcggctgcttcggctcgcgctgaggtgctgagccctgcagcggctgaatccagtggt
ggtcgccgccgccgtggtggccgcggtgcgcgcggcgcggctgacgctccagagttgatc
agcctcgatgacaccactaccgctggcctatcccatgaggcggccaccacgccggcagaa
cccagctcacgccgcccagagccgcagcttgtggctgtgccgatggatgccgagcaggaa
ttggtctacggctggcttggcctgaatcccacgttgctgttggatcctgtgccggcggcc
gacaatctggtggtgcgcgtggttcgtcctggggaagacgctgaagcggtgctggaggag
gcccgtcagcagctggcagcctccggccctcgccgccggcgcaggggacgcggcgccaat
ggtgcctccagcccagctcctgcaaatggccacggtgcttcggctgaacgggacacggcg
accctgccggtcacggtggagatcacgccgctgccggtggaaaccttccccactgtgccg
gtgctgcccgatagcggcctagagctcggtgttgcctctgcagaacctgccgctgaagcc
tccaatggccgccgtgtgcgcagccgccggcgtaacgatgctcccgctgtgggcgctgcc
gctgtggctgtaatgcctgccgttgaggagcctgcggctaacgccgaagccgccgaagac
gacaccggcgagccccgccgccgccgccgccgctcctcagcgaccgagtga
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