Synechococcus sp. LA31: KJJ24_10725
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Entry
KJJ24_10725 CDS
T10468
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
synl Synechococcus sp. LA31
Pathway
synl03420
Nucleotide excision repair
synl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
synl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KJJ24_10725
03430 Mismatch repair
KJJ24_10725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synl03400
]
KJJ24_10725
Enzymes [BR:
synl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KJJ24_10725
DNA repair and recombination proteins [BR:
synl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KJJ24_10725
MMR (mismatch excision repair)
Other MMR factors
KJJ24_10725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
QVV66936
LinkDB
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Position
complement(1959795..1962203)
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AA seq
802 aa
AA seq
DB search
MSFLAGLNDAQRRAVDHHVGPLLVVAGAGSGKTRALTHRIAHLIGHHGVDPGELLAVTFT
NKAAREMKERLELLLAQKLAQSQFGQPWSTLKPIDQRQLRSRIYREVIKDLWIGTFHALF
ARLLRFDIDKLSDPEGLSWTRQFSIYDEGDAQSLVKEIVTQELGLDPKRFEPKKVRWAIS
NAKNQGWMPEQLEEDAGGHRGKLMAESYRRYRRALAANNALDFDDLLLLPVQLLRQNDQV
RHYWHRRFRHVLVDEYQDTNRTQYELIKLLVTDGRDPEAFDDWQQRSVFVVGDADQSIYS
FRAADFTILMGFQDDFGDGAADDVTGTMVKLEDNYRSTATILEAANALIAHNTERIDKVL
KPTRGEGELITLTRCDDEIAEAEAVVHRMRMLDAAHPELSWRDMAVLYRTNAQSRAMEES
LVRWGIPYVVVGGLRFYDRREIKDILSYLKLLVNPADTVSLLRVLNTPKRGIGKTTIERL
TDASNQLSIPLWDVVSDPEAVRTLGGRSAKGLLQFCELIQQLRSRSEQAAPSEMVQLVME
QSGYLAELIAAGTDEAEDRRRNLNELVNAALQYQEETDEGSLEDFLASAALASDADSKDS
EQDRVTLMTLHASKGLEFPVVFLVGLEQGLFPSYRSLDDPASMEEERRLCYVGITRAKER
LFLSHASERRLWGGMREPAIPSVFLSELPEALVQGDLPRSGGTALRRDNRLDRLTRVDRD
ESTHVNAGGEAGQPANAVRRRTSTAGNGGKDWAVGDRLLHTSFGMGTVTHLFGSGEKISI
AVKFEGMPPKILDPRLAPIEPA
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
ttgagctttctcgccggcttgaatgatgcccagcgaagggctgttgatcaccatgtaggt
ccgctgctggtggttgctggcgctggtagtggaaaaaccagggcgctgacccaccggatc
gcacaccttatcggacatcatggtgttgatccaggcgagttgctagcggttactttcacc
aacaaggccgcacgcgagatgaaagaacggcttgagctcttgctcgctcagaagttagct
cagagtcagtttggtcagccctggagcacgctcaagccgattgatcaacgccaattgcgc
tcgcggatttatcgcgaagtgatcaaagatctttggatcggcactttccatgcgttgttt
gcccgtctattgcgttttgatattgataaacttagcgatcctgaggggctcagctggaca
cgccaattctcgatttacgacgagggcgatgcacagagtcttgtgaaagagattgtgacc
caagagttgggtttggatcccaagcgttttgaacccaaaaaggttcgctgggccatcagt
aatgccaagaatcagggctggatgcccgagcagcttgaggaggatgcgggtggccaccga
ggcaaactgatggccgaatcctatcggcgctaccgacgtgcgttggctgcaaataatgct
ttggactttgatgatctgctgcttttgcctgtgcaactgttgcgccagaatgatcaggtt
cgccattattggcaccgacgcttcaggcatgtacttgtcgatgagtaccaagataccaat
cgtacccagtatgagttgatcaagctattggtgaccgacggccgagatcctgaggcattt
gatgactggcaacagcgctccgtatttgttgttggcgatgctgatcagagcatttacagc
ttcagagctgctgacttcaccattctgatgggatttcaggatgactttggtgatggcgct
gctgatgatgtgaccggcacgatggtgaagctcgaagataactatcgatccacggccacc
atcctagaggctgctaatgcgctgattgctcataatacggagcggatcgataaagttctg
aagcccacgcgcggagagggtgaactgattaccttgacccgctgtgatgatgaaattgct
gaggctgaggctgtcgtgcatcgcatgcgcatgctcgatgctgctcatcctgagctgagc
tggcgcgatatggctgtcctctatcgcaccaatgcgcaaagtagagcaatggaggagtct
cttgtgcgttggggtattccttatgttgttgttggtgggttgcgtttctacgaccgtcgt
gagatcaaagatatcctttcttatttgaagttgttggttaatcctgcggataccgttagc
ttgctgcgtgttttaaatactcctaagcgcggtatcggcaaaaccacgattgagcgcctc
actgatgcctcgaatcaacttagtattcctctttgggatgttgtcagcgatcccgaagct
gttcgcaccctcggtggacgctcggcgaaaggtctgctccagttttgtgaactgattcag
cagctacggtcacgctctgagcaagctgctccctctgagatggtgcaattggtcatggag
cagagcggttatctagcggagctcattgcggccggcaccgacgaggcagaagatcgccgc
cgtaatctcaatgagcttgtgaacgcagcgcttcaatatcaagaagaaactgacgaaggt
tctttggaggattttctggcttcagccgccctcgctagtgatgcagacagtaaggattcc
gagcaggacagggtcacgttgatgaccctgcatgccagcaaaggtcttgagtttccggtg
gtttttctggttggtttggaacagggtctgtttcccagttaccgctccttggatgatcct
gcctcgatggaggaggaacgtcgtctctgctatgtgggaattacccgtgccaaggagcgc
ctgttcctgtcccatgccagtgagcggcgtctctggggtggcatgcgtgagccagccatt
ccgtcggtgtttctctccgagctacccgaggctcttgtgcaaggtgatcttccgcgcagc
ggtggcacagccctgcgccgagacaatcgtttagatcgcctcacccgggtcgaccgtgat
gaaagcacgcacgtgaacgccggtggtgaggctggtcagccagccaacgcggtgcggcgc
agaacatccacggccggtaatggtggtaaggactgggcggttggcgatcgcctgctacac
acgtctttcggtatgggaacagtcacacatctgttcggcagtggtgaaaagatctccatc
gcggtgaagtttgagggaatgccgcccaaaatcctcgatccgcgcctggcaccgattgag
cccgcctga
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