Synechococcus sp. LA31: KJJ24_14135
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Entry
KJJ24_14135 CDS
T10468
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
synl Synechococcus sp. LA31
Pathway
synl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
synl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KJJ24_14135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synl03021
]
KJJ24_14135
03400 DNA repair and recombination proteins [BR:
synl03400
]
KJJ24_14135
Enzymes [BR:
synl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KJJ24_14135
Transcription machinery [BR:
synl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KJJ24_14135
DNA repair and recombination proteins [BR:
synl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KJJ24_14135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Poly_export
Apocytochr_F_C
DUF6381
Fn3_arc
Motif
Other DBs
NCBI-ProteinID:
QVV67517
LinkDB
All DBs
Position
2615880..2619989
Genome browser
AA seq
1369 aa
AA seq
DB search
MTATPSKKSKKSSKKAAAEAPAPVLGASAPLSKAAPVFRNRTIDKKQLRNLMAWAYKNHG
TASTASLADELKDLGFHYATQAAVSISVDDLRIPGEKARLLEEAEQQITDTEERYRLGEI
TEVERHTKVIDTWTETNERLVEEVKKNFNENDPLNSVWMMANSGARGNMSQVRQLVGMRG
LMANPQGEIIDLPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQ
DVIVREDDCGTTRGIPINADDKGRYAAKLVGRLAAEPVLDGEGNLIVDRDGEIDAPLTAR
IEAAGVKTVVVRSPLTCEAARSVCRKCYGWALAHNELVDLGEAVGIVAAQSIGEPGTQLT
MRTFHTGGVSTAETGVVRSTVAGTIEFDAKARVRPYRTPHGVEAQIAETDFTLTVKPSGT
GKAQKLGITSGSILFVEAGAETPSDVMLAQISSGAAVKKSVEKATKDVICDLAGQVRFED
VIQPKEVTDRQGNITLKAQRLGRMWVYSGDVYNLPPNAQPVVSGNKAVTTGEVLAESRLV
SEYGGAVRLRDSAGDSREVQIVTTSLTLKDCKLVGESTHSGELWHLEGKDSIRYRLNTHP
GTKIAGGEVIAELADDRFRTQTGGIVKFAPGLAIKKARSAKNGYEVSKGGTLLWIPQETH
EINKDISLLMIEDGQWIEAGTEVVKDIFSQTAGIVTVTQKNDILREIIVRSGQLHHVSDA
KAISRFSDGKMVNPGEEIAKGLKAEAMVFVEAVDTADGGALLLRPVEEYRIPDEAHLPEQ
GTVVQKNGPSLGLKATQRLAFKDGELIKSVDGVELLRTQLILETFDTTPQMTVDVESVPD
KRAKTIDRLQLVILESLLVRRDTLSDASHGSTHTELSINDGDSVKAGDVVATTQILCKED
GVLALPDNLDGDPVRRLIVERASDTRNIDLGSATPVVSVGQRLVDGDLLANSVEAPCCGQ
VEAVSGSIVTIRIGRPYMVSPDSVLHVRDGELVQRGDSLALLVFERQKTGDIVQGLPRIE
ELLEARRPRESAVLCRKAGTVEIKQGEDDDSVNVTVIEGDDAITDYPILLGRNVMVSDAQ
QVTAGELLTDGPINPHELLECYFEDLRSRKPTMEAAMEAISKLQFRLVQEVQNVYKSQGV
TIDDKHIEVIVRQMTSKVRIEDAGDTTLLPGELIELRQVEQVNSAMAITGGAPAEFTPVL
LGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGF
EEELRAEAGPHPDILDEDAMNYRRMQNLRPDYTVEMPAAPAATTAGALLDDPSDADLEAT
RSRHGIEASASNLAAFTRPAVEEGLEEELIADPAALEGLQEEGLLTDES
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccactccctccaagaagtccaagaagtccagcaagaaggccgcagccgaagct
ccggcacccgtgctcggggcctccgcgcccttgagcaaggccgctccggtgttccgcaac
cgcaccatcgataaaaagcagctgcggaatctgatggcgtgggcctacaagaaccacggc
actgcctccaccgcttctttggccgatgagctgaaggatctgggcttccattacgccacc
caagctgctgtgtcgatttcggtcgacgacctgcgcattcctggagaaaaagcgcgtttg
ctggaggaagcagagcagcagatcaccgataccgaagagcgttatcgccttggtgaaatc
accgaggtggagcggcacaccaaggtgatcgacacctggacggagaccaacgagcgtctg
gttgaagaagtcaaaaagaacttcaacgagaacgatccgctcaactcggtgtggatgatg
gccaactctggcgcccggggcaacatgtcccaggtgcgtcagctggtgggaatgcgtggc
ctgatggccaacccccagggcgagatcatcgaccttccgattcgcaccaatttccgcgag
gggctcacggtcaccgaatatgtgatctcctcctacggcgcccgcaagggtctggtggac
accgctctgcgtaccgccgactcgggttacctcacccgccgtctggtggacgtggcccag
gacgtgatcgtgcgcgaggatgactgcggcaccacccgcggcatccccatcaatgctgat
gacaagggccgttatgccgccaagctcgtcggccgtctggccgctgagccggtgctcgat
ggcgagggcaacttgatcgtggatcgcgatggcgagatcgatgcccccctcaccgcccgc
atcgaagcggccggtgtgaagaccgtggtggtgcgctcaccactcacctgcgaagccgcg
cgttcggtctgccggaagtgctacggctgggctctcgctcacaacgagctggtcgacctg
ggtgaagccgtgggcatcgtggccgcccagtcgatcggtgagcccgggacccagctcacc
atgcggaccttccataccggtggtgtgtccaccgccgaaacgggggtggttcgctccacc
gtggccggcacgatcgaattcgacgccaaggcccgcgtgcgtccttaccgcaccccccac
ggtgtggaagcccagatcgcggaaacagacttcaccctcaccgtgaagcccagtggtact
ggcaaggcccagaagctcggcatcacctcaggttcgatcctgtttgtggaggcgggtgct
gagactccctccgacgtgatgctggcccagatctcttccggcgccgccgtgaagaagagc
gtggagaaggccaccaaggatgtgatttgtgacctggctggtcaggtgcgttttgaagat
gtgatccagcccaaagaggtcaccgaccgtcagggcaacatcaccctcaaggctcagcgt
ctgggccggatgtgggtgtacagcggcgacgtgtacaacctcccgcccaatgcccagcct
gtggtgagtggcaacaaggccgtcacgactggtgaagtgctcgccgaaagccgcctggtc
agcgagtacggaggcgccgtgcgcctgcgcgatagcgccggtgactcccgcgaggtgcaa
atcgtcaccaccagtctcaccctcaaggattgcaagttggtgggcgaatccacccactcc
ggtgagctgtggcatctggaaggcaaggacagcattcgttatcgcctcaacacgcacccc
ggcaccaagatcgccggcggtgaagtgattgctgaactggccgacgatcgcttccgcacc
cagaccggtggcatcgtgaagttcgcgcccggactggccatcaaaaaggctcgcagtgcc
aagaacggctacgaggtgagcaagggcggaaccttgctctggatcccgcaggaaacccac
gagatcaacaaggacatctccctgttgatgattgaggacggccagtggatcgaggccggt
accgaggtggtcaaggacattttcagtcagaccgccggcatcgtgacggtgacgcagaaa
aacgacattctgcgcgaaatcatcgtgcgctccggtcagctgcaccatgtttccgatgcc
aaggcgatcagccgctttagcgacggcaagatggtcaacccgggtgaagagattgccaag
ggtctcaaggctgaggccatggtgtttgtggaagctgtggacaccgcagacggcggtgct
ctgctgctgcgtccagtggaggaataccgcatccctgatgaagcgcacctgcccgaacag
ggaaccgttgttcagaagaacggccccagcctgggcctcaaggccacccagcgcctcgcc
ttcaaggacggtgaactgatcaagagcgtggacggcgttgagctgctgcgcacccagttg
attctggaaaccttcgacaccaccccccagatgacggtggatgtggagtcggtgcccgac
aagcgcgccaagacgatcgatcgtctgcagttggtgatcctcgagagcctgctggtgcgt
cgcgacaccctctccgatgcgagccacggttccacgcacaccgagctctcgattaacgat
ggcgactccgtgaaggctggtgatgtggtggctaccacccagatcctctgcaaggaagac
ggtgtgctggccctgcccgacaacctcgacggtgatccggttcgccgcctgatcgtggag
cgcgccagcgacacccgcaacatcgatctgggttccgctacgcctgtggtgtcagtggga
cagcgcctggtggatggcgacctgctggctaacagtgttgaagccccttgctgcggccag
gtggaggccgtctccggcagcatcgtcaccatccgcatcggtcggccctacatggtgtca
cccgattccgtgctgcatgtgcgcgacggtgaactggttcaacggggcgactccctggct
ctgctcgtgttcgagcgtcagaagaccggcgacatcgtgcagggtctgcctcgtattgaa
gagctcctggaagcccgtcgtccgcgggaatcagcggtgctttgccgcaaggccggcacc
gtggagatcaagcagggtgaagacgacgactccgtcaatgtcacggtgatcgaaggcgat
gacgccatcactgattacccgatcttgctgggtcgcaacgtgatggtgagcgacgcgcag
caggtgaccgccggtgagctgctcaccgatggcccgatcaacccccacgagttgctggag
tgctatttcgaagatctccgcagccgcaagcccaccatggaggcggccatggaggccatc
tccaagctgcagttccgcttggtgcaggaagtgcaaaacgtctacaagtcgcagggcgtc
accatcgatgacaagcacatcgaagtgatcgtgcgccagatgaccagcaaggtgcgcatc
gaggacgcgggtgacaccaccctgctgcccggtgagctgatcgagctgcgtcaggtggag
caggtgaacagcgccatggcgatcactggcggcgctcccgccgagttcaccccagtgctg
ctgggtatcaccaaggcctcgctcaacaccgacagcttcatctccgcggcctccttccag
gagaccacccgcgtgctcaccgaggctgccatcgaaggcaagagcgactggctgcgcggt
ctcaaggagaacgtgattatcggtcgcttgatcccggctggtacgggcttcagcggcttc
gaggaggaactgcgcgccgaggcgggaccccaccccgacatcctcgatgaggatgcaatg
aactaccgccgcatgcagaacctacggcctgattacaccgtggagatgccggcggcaccg
gctgccaccaccgccggtgctctgctcgacgatccctccgacgcggatctggaagccacc
cgcagccgccacggcatcgaagcctcggccagcaaccttgctgccttcactcgccccgcg
gtggaagaaggccttgaggaggagctgatcgccgatcctgcagcccttgagggtcttcag
gaagaaggcctgctcaccgacgagtcatga
DBGET
integrated database retrieval system
