Synechococcus sp. NIES-970: NIES970_03230
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Entry
NIES970_03230 CDS
T09762
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
synn
Synechococcus sp. NIES-970
Brite
KEGG Orthology (KO) [BR:
synn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
synn03016
]
NIES970_03230 (rnb)
Enzymes [BR:
synn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NIES970_03230 (rnb)
Transfer RNA biogenesis [BR:
synn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NIES970_03230 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAW95418
UniProt:
A0A1Q2TUQ5
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All DBs
Position
complement(343260..345272)
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AA seq
670 aa
AA seq
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MEKGQLIEFRLQGERVLAVAERPEGKKDWIVIDGRGQSHKLRPQRVEYQVAAAPFDPADI
PSFLTQSQSLVDPENLAVAWEFLVEAAENATPASLAQLLFSEQTPQQCYACHLMLVEDKI
FFKRKGEHYEPRSEAQVREIQHQLEVEAHKEREKTEFLQRVNQAIAGEIVQWEDSDRQRF
ESLERFVLYPEQATKAAQDLLEMIGRSPTTEQAFQLLVSLGWWTAHENLALLRSGYPRKF
SQKVLDVSHARLSALPGDADADNRVDLTYLKTYTIDDESTLEIDDGLSIETLADGRRKVW
IHIADPTCLLTPGDELDLEARRRSTSLYLPTGMISMFPEDLAIGPMSLRQGQVCAALSFG
VLLTDDGAIADYEITPSFVKPTYRLTYDDVAEMLHLRIQAESEIAFLAEFAHKRKQWRDS
QGSISIKMPEASIKVQDEDIFIDVLHGSMSRELVAEMMILAGEVAGHYGRTHGLPLPFRG
QPQPELPSEEELLLLPAGPVRACAVRRCMPRSEMGTNPVRHASLGLDSYIQVTSPIRRYT
DLLAHFQIKAHLRGDPLPFSADELKEILYSVVTSSQEAVHVERQTNRYWSLEYLRRNADQ
VWQGLVLRWLREDERLGVILLEELGLELPHRFERPVALGDRLEVKVSQADPHKDEIRFRE
LLERDVATAS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaaggacaattgatcgagttcaggctgcagggagaacgagtacttgctgtagct
gaacgtcctgaaggaaaaaaagactggatcgtcattgatggacgggggcaatcccacaag
ctacgtccccaacgggttgaatatcaagtagcggctgccccctttgatccagctgatatc
cccagctttttgacccaaagccagagccttgttgaccccgaaaaccttgctgtggcttgg
gaatttctggttgaagctgcagaaaatgccacccctgcatccctggctcaacttcttttt
tcggaacagacaccccagcagtgttatgcctgccacttgatgttggtagaagacaagatt
ttttttaagcgcaagggggagcattacgaaccgcgttcggaagctcaggtgcgagagatt
cagcatcaattggaagtagaagctcacaaagaacgagaaaagacggagtttctacaacgg
gtaaatcaggcgatcgccggcgaaattgtgcaatgggaagatagtgatcggcaacgcttt
gagagcttagaaagatttgtgctctacccagagcaggcgacaaaggcggcccaggatctc
ctcgaaatgattgggcgatcgcccaccacagaacaagcctttcaacttttggtttccctc
ggttggtggactgctcacgaaaatctggccctcctccgcagtggctatcccagaaaattt
tctcagaaggtactcgacgtgtcccatgcccgtctttccgctttgcccggtgatgccgat
gccgacaatcgtgtcgatctcacgtatctcaagacctacactatcgacgatgagagtacc
ttagaaattgatgacggtctcagtattgagacccttgccgatggacggcgcaaggtttgg
attcacattgccgacccgacctgtctgctgactccaggggacgaactcgaccttgaagcg
cgtcgtcgcagtaccagtctctatctgcctacggggatgatctctatgttccccgaagac
ctggctattgggccgatgagtttacgccaaggccaggtgtgtgcagccctgagcttcggg
gtactgctcactgacgatggggcgatcgccgactatgaaatcacccccagtttcgttaaa
cccacctatcgcctcacctatgatgatgtggctgaaatgctgcatctgcggatccaggcc
gaatcagaaatcgccttcctcgccgaatttgcccataaacggaagcaatggcgcgacagc
caagggtcaatcagcatcaaaatgccagaagcctcgattaaagttcaggatgaagacatt
ttcatcgatgtcctccatggttccatgtcccgggaactggtcgccgaaatgatgattttg
gcaggggaagtggctgggcattatggccggacccatggtctgcccctcccctttcgaggt
cagccccagccagaactcccctccgaagaagaactgctgctcttacccgccgggcctgtc
cgggcctgtgctgtccgtcgctgtatgccccgcagtgaaatgggcactaatccagtgcgc
catgccagcctgggcctagactcttatattcaggtgacatccccaattcgtcgttataca
gatctactggcccactttcaaatcaaggcccatctgcggggtgatcccttaccgttttct
gccgatgaactcaaggaaatcctgtatagtgtcgtcacttcaagccaagaagcagttcat
gtggaacgacagaccaaccgttactggagcttagaatacctccgccgcaatgctgaccaa
gtgtggcaaggtctagtcttgcgttggctccgggaggacgaaaggcttggggtcatcctt
ctagaagagttgggtttggagctcccccatcgttttgaacggcctgtggccctaggcgat
cgcctcgaagtgaaagtcagccaagccgatccccacaaggatgaaattcgcttccgggaa
ctgctagaaagggatgttgccaccgcatcttag
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