Synechococcus sp. NIES-970: NIES970_08100
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Entry
NIES970_08100 CDS
T09762
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
synn
Synechococcus sp. NIES-970
Pathway
synn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES970_08100 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synn03019
]
NIES970_08100 (deaD)
03009 Ribosome biogenesis [BR:
synn03009
]
NIES970_08100 (deaD)
Enzymes [BR:
synn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES970_08100 (deaD)
Messenger RNA biogenesis [BR:
synn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES970_08100 (deaD)
Ribosome biogenesis [BR:
synn03009
]
Prokaryotic type
rRNA helicases
NIES970_08100 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAW95895
UniProt:
A0A1Q2TW04
LinkDB
All DBs
Position
complement(848691..850205)
Genome browser
AA seq
504 aa
AA seq
DB search
MTISFQTIGLSEARVDLLESIGFEKPTEIQCKAIPAILGGRDVVGLSQTGTGKTAAYSLP
FLENIDIEQKTVQGLILTPTRELAVQVTQSLKEFAVDRRLWVLTVCGGQSMERQIRSLQK
GVHIVVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKERQTV
CFSATMPPAIRDLVENFLNDPVNITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMA
NPESAIIFVRTKRTASELTNELLEAGQSADEYHGDLNQNQREKLVRRFKEGKIKMIVATD
IAARGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIERR
VKQSLKVSTIPSRAQVEAQRITRLEDEVKAALAGERMASFLPIVKRLGDEYDPQAIAAAV
LQMMYDTDSPDWMKEDWEVPEISETTGIPKPTKGGGRRSGGGGYKGGYRSSSYGDRDRGG
YQGDRDRRGGGGGRRSYSSPTRSS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaccatttcttttcaaaccatcggcctttctgaagcacgcgttgacctattagaaagc
atcggcttcgagaaaccgaccgaaattcaatgtaaagcaatccccgcaatcctcggcggt
cgggacgtcgttggcctctcccaaacaggcaccgggaaaaccgccgcctattctttgcct
ttcctcgaaaacatcgatattgagcaaaaaacagtccaaggtttaatcctgacgcccacc
cgggaactagcagtgcaggtgacccagtctctcaaggaattcgccgtcgatcgccgtcta
tgggtactcaccgtttgcggtggccaatccatggagcggcaaattcgtagcctccagaag
ggtgttcacatcgttgtgggaactccaggccgggtgattgaccttttggaacggggcaag
ctgtcctttgaagagttgcgttgggccgtgctcgatgaagctgatgaaatgctgagcatg
ggctttattgatgatgtgaaaaagattttgcgtcagtcgccgaaggagcgccaaacggtt
tgtttctcggccacaatgcccccggcaattcgcgatttagtggaaaatttcctcaatgac
ccggtgaatatcaccattaaacagccccaggtcacaccggatcggattgcccaagaagtc
tatatgattccccggggctggtcgaaaaccaaggctctgctgcccatccttgagatggcg
aacccggaatcggcgatcatcttcgtgcgcaccaagcggacagcttcagagttgaccaat
gagttgctcgaagccggccaaagcgccgatgagtaccatggcgacctcaaccaaaaccaa
cgggaaaaacttgttcgccgctttaaggaaggcaagatcaaaatgatcgtcgccaccgac
attgcggctcggggcttggatgtggagaacctcagccatgtaattaactttgacttgccg
gataataccgaaagctatattcaccgtattggtcgaacgggccgtgctgggaaaacaggg
acggcgatcgcccttgtagaacccagtgaccgtcgtctattgcgccaaatcgaacgccgg
gtgaaacaatccctcaaggtttctactattccgagccgtgcccaagtggaagcacaacgc
atcactcgtttagaagatgaagtgaaggcggcactcgctggtgaacggatggcttctttc
ctccccatcgtcaagcgtttgggtgatgagtatgatccccaggcgatcgcagcggcggtt
ctccagatgatgtacgacaccgattctcccgattggatgaaggaagattgggaagtacct
gaaatcagcgaaaccaccggtattcccaaacccactaaaggtggcggtcgtcgctctggt
ggcggcggctacaaaggcggttaccgttcttctagctatggcgaccgtgaccgtggcggc
tatcaaggcgatcgtgatcgtcgtggtggcggcggtggtcgtcgctcctacagcagcccg
actcgtagttcctaa
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