Synechococcus sp. NIES-970: NIES970_12710
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Entry
NIES970_12710 CDS
T09762
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
synn
Synechococcus sp. NIES-970
Pathway
synn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES970_12710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synn03019
]
NIES970_12710
Enzymes [BR:
synn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES970_12710
Messenger RNA biogenesis [BR:
synn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES970_12710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
AAA_22
UvrD-helicase
Cas3-like_C_2
ERCC3_RAD25_C
HI1480
NAD_binding_3
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAW96345
LinkDB
All DBs
Position
1302909..1304198
Genome browser
AA seq
429 aa
AA seq
DB search
MTFDTLGLSAALLRAVADENYSAATPIQQQAIPPILQGKDILASAQTGTGKTASFTLPLL
QLLSENTARKGQRSPRALILTPTRELAIQVSESVNTYGKYLSLKTVVVFGGVNINRQIKG
LEQGADIVVATPGRLLDHVAQKTVDLSRIEILVLDECDRMLDMGFIRDIRKILARIPENR
QTLLFSATFSTEIQKLAKTLLKNPVQVEVAPRNTAAEQVEQVVHPVDRDRKRELLSYLIG
FNNWRQVLVFTRTKHGANRLAEQLAQDGLKTAAIHGNKSQAARSRALNEFKQGKVRVLVA
TDVASRGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGRAISLVSHDEHPLLKDIE
KLLKRKLDKDIIAGYEPNPVTPGESSKTSQGNPRQSRVARNQPGPKNRSSTSRKPRSSTT
SKHKRRGPG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgacaccctcggtctttcggccgcactattgcgcgctgttgccgacgaaaac
tacagtgctgcaaccccgattcaacagcaggcgatcccacccatcttgcaaggaaaagac
attctcgccagcgcccagaccggtacaggaaaaacagccagttttacactccctctactc
caacttctgagtgaaaatactgcgcgaaaaggacaacgatcgcctagggcattaatcctc
accccgacccgtgaactggccatccaggtgagtgaaagcgttaacacctacggtaaatat
ttgtcgctgaagacggtggtcgtctttgggggcgtcaatatcaatcggcaaatcaaaggt
ttagaacagggtgcagatattgtggtggccacaccggggcgattactggaccatgtggcc
caaaaaacagtcgatctctcccgcattgagattttggtcttggacgaatgcgatcgcatg
ttagatatgggctttatccgcgatattcgcaaaattttggcgagaatcccagaaaatcgc
cagacattgctcttttcagccacattttccactgaaattcaaaaactagcaaaaacatta
ctcaaaaatccagtacaggttgaagtggctccccgcaataccgccgctgaacaggtggag
caggtggtgcatcccgtcgatcgcgatcgcaaacgggaattattgtcctatctcattggc
tttaacaattggcgacaggttttagtatttacccgcaccaaacatggggcgaaccgcctg
gcggaacaattggcccaggatggcctaaaaacagcagcaattcacggcaataaaagtcag
gccgcccgcagccgcgccttaaacgaatttaaacagggtaaggttcgcgtgttggtggcg
acagacgtggcctcccggggtttggatattgaccagttgccccatgtggtgaactttgag
ctacccaatgtaccagaagattatgtccatcgcatcggccgcacagggcgggcgggcaat
gaaggccgggcgatttcgctggtatcccacgatgaacatcccctcctaaaagatattgaa
aagctgctgaagcgcaaactcgacaaagacatcattgctggttacgagccaaaccctgta
acccccggagaatcaagcaaaacatcccaggggaaccccagacaaagccgggttgctcga
aatcaaccaggccccaaaaaccgttctagcacgagtagaaaaccacgctcttctaccact
agcaaacacaaacgccggggaccaggttag
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