Synechococcus sp. NIES-970: NIES970_19230
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Entry
NIES970_19230 CDS
T09762
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
synn
Synechococcus sp. NIES-970
Pathway
synn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES970_19230 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synn03019
]
NIES970_19230 (recQ)
03400 DNA repair and recombination proteins [BR:
synn03400
]
NIES970_19230 (recQ)
Enzymes [BR:
synn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES970_19230 (recQ)
Messenger RNA biogenesis [BR:
synn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES970_19230 (recQ)
DNA repair and recombination proteins [BR:
synn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES970_19230 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_5
Helicase_Sgs1
HTH_24
DUF6115
GerE
Motif
Other DBs
NCBI-ProteinID:
BAW96979
UniProt:
A0A1Q2TZ16
LinkDB
All DBs
Position
complement(1994777..1996909)
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AA seq
710 aa
AA seq
DB search
MSQFPSLEAALKHFFGYDNFRHGQKNVIEAALQNRDILALMPTGAGKSLCFQLPALLKPG
LTVVISPLIALMQDQVDALTDNGIGATFLNSTLNLDQARSRIQSIFNGKIKLLYIAPERL
FNEGFQHFLLDVYQSIGLAGFVVDEAHCVSEWGHDFRPEYRQLTHIRRRYPQTPCHAFTA
TATQRVRQDIIDQLALQNPSFHCTSFNRPNLYYEVVSKGSKSYTQLLTYVRKRRGQAGII
YCSSRKKVDELADRLQQDGIKALPYHAGLADGLRADHQEQFIRDDVPLMVATIAFGMGIN
KPDVRFVVHYDLPTNLERYYQESGRAGRDGEPAHCTLFYSAGDIKKAEYFIELKEDEQDK
RIAYQQLQKMIDYAEGSECRRTIQLSYFGEQFLGNCAGCDNCQNPRPLEDWTIEAQKFLS
CVARCRERYGMAYIIDVLKGSKRDKILQNKHHELSTYGIGRDRTKDEWKNLGRSLLHQGL
MLESSDGYRVLKLNDLSWEILKKQRQVNIPIERRQTAAEILGMGDNHLDAEILFGELRQL
RKQLADANWIAPYMVFSDATLRQMATRRPRTQADFSLISGVTSAKYQRYGEPFLAVIQEF
CATQAPPKPQVNGTQLITFQLYQQGLSVVEIAKQRNLTAGTINEHLAILLQSGEAIDLDR
LVKPEAQAEIEQAIATLGPVSLSQLREHLQEKYSYDAIKLVRAKLIQQSA
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtttccgtccctagaagccgccctcaaacacttcttcggatatgacaatttc
cgccatggtcaaaaaaacgtcatcgaagcagctctccagaaccgcgatatcctcgccctg
atgcccaccggggccggaaaatctctgtgtttccagttgccagccctcctcaaacctggg
ctaaccgtcgttatttctcccctgatcgccctgatgcaagatcaagtggatgccctcacg
gacaacggcattggcgcgacttttctgaatagcaccctaaatcttgaccaagcgcgatcg
cggatccagtccatttttaatggcaagatcaagctgctctatattgcccctgaacggctc
tttaacgaaggatttcagcactttcttttagatgtgtatcaatctatcggtttagccgga
ttcgttgttgatgaagcccactgcgtttctgaatggggccatgattttcgtccagaatat
cgccaactgactcatatccggcgacgctatccccagaccccttgccatgccttcaccgcc
actgcaacacaacgggtccgccaagatattattgaccaacttgctctccaaaaccccagt
tttcattgcaccagctttaatcgtccgaacctctactatgaagtcgtatccaagggcagc
aaaagctacacccaacttttaacctatgtccgcaaacggcgcgggcaagcgggcattatt
tactgttctagtcgcaaaaaagtagatgaattggccgatcgcctccaacaagacggaatc
aaagctctgccctaccatgcgggtctagcagacggcttacgggccgatcaccaagagcaa
tttatccgggacgatgtgcccctgatggtggcgacgatcgcctttggaatgggaattaat
aaacccgatgtacgctttgtggtgcattacgatttgccgacaaatttagaacgctattac
caagaatcgggccgggccggacgggatggggagccagcccactgcactttgttttatagc
gccggggacatcaaaaaggcggaatatttcatcgaactaaaagaagacgagcaggacaaa
agaatcgcttaccagcaactacaaaaaatgatcgactatgccgaggggagtgaatgtcgg
cggacgatccaactgagctattttggggagcaatttctggggaactgtgcaggttgtgac
aattgccaaaatcctcgccccctagaagattggaccatcgaggcccaaaagtttttgtcc
tgtgtggcccgctgccgagaacggtatggcatggcctacattatcgatgtcctcaagggt
tcaaagcgagacaagattcttcagaataaacatcatgagctttctacctacggcattggc
cgcgatcgcactaaagacgagtggaaaaatctcgggcgatcactcttgcaccagggatta
atgctagaaagcagtgatggttatcgcgttttaaaactcaatgacctcagttgggagatt
ctcaaaaaacagcgccaggtgaatatccccatagaacgacgacagacagcggccgaaatc
ctgggcatgggtgacaatcatctcgatgcggaaattctgtttggggaactgcgccagctg
cggaagcaattggccgatgccaactggattgccccttacatggttttttctgatgcgacc
ctccggcaaatggcgacccggcggccgcgcacccaggcagatttttctctcatttccgga
gtgacgagcgctaaatatcaacgttatggtgaaccttttttggccgtaattcaagaattt
tgtgccacccaggccccaccgaaaccccaggtcaacggcacccagttaatcacattccaa
ctctatcaacagggtctttcggtggtagaaatcgccaaacagcggaatctcacggcaggc
accatcaatgagcacctggcaatcctgttgcagagtggggaagccattgacctcgatcgc
ctggtgaaaccagaggcccaagcggaaatcgaacaggcgatcgccaccctggggccagtg
tccttgagccaactacgggaacatctccaggaaaaatatagttatgatgcgataaaactg
gtgcgggccaaattgattcaacaatctgcatag
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