Synechococcus sp. NIES-970: NIES970_20360
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Entry
NIES970_20360 CDS
T09762
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase, gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
synn
Synechococcus sp. NIES-970
Pathway
synn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
synn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES970_20360 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synn03021
]
NIES970_20360 (rpoC1)
03400 DNA repair and recombination proteins [BR:
synn03400
]
NIES970_20360 (rpoC1)
Enzymes [BR:
synn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES970_20360 (rpoC1)
Transcription machinery [BR:
synn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES970_20360 (rpoC1)
DNA repair and recombination proteins [BR:
synn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES970_20360 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAW97090
UniProt:
A0A1Q2TZL0
LinkDB
All DBs
Position
complement(2122366..2124276)
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AA seq
636 aa
AA seq
DB search
MKSQQEQHFDYVKIGIASPERVRQWGERTLPNGQTVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAAVTHVWYLKG
IPSYLSILLDMALRDVEQIVYFNAYVVLDPGNATNLSYKQLLTEDQWLEIEEQLYSEDSQ
LEDVEVGIGAEAIERLLQELALEEIAEELREGIANSKGQKRAKLIKRLRVIDNFIATGAR
PEWMVLNSIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPNLKIYQCGLPREMAIELFQPFVIQRLIKSTIVSNIKAAKKLIQRGDESVWDVLA
EVITGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LEAQAEARLLMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPGAQRGAGRYFSSMDD
ALRAYEQGDVDLHAYVWLRYLGDVETHEADDKVLESQTLEDGSVLKVYRERKVRETADGA
MISQFIRTTPGRIIYNKTIQNALDLTERVLPEGLPV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtcaacaagaacagcattttgattacgtcaaaattggtatcgcttccccggaa
cgggtccgccagtggggggagcgcactttgccaaatggccaaaccgttggggaagtcaca
aaaccagaaaccatcaactatcgaactttaaagccagaaatggatggtttattttgtgaa
cgaatttttggtccggcaaaggactgggaatgtcactgcggcaaatataagcgcgtacgc
caccgtgggattgtttgcgaacgctgtggggtagaggttacagaatctcgcgtccgtcgc
caccgcatgggctatatcaaactagcggcagccgttacccatgtgtggtatctgaaaggg
attccgagctatctcagcattttgttggatatggcattgcgcgatgtggagcaaattgtt
tacttcaacgcctatgttgttctcgaccccggtaacgccacaaacctcagctataagcaa
ttgctgacggaagatcagtggctagaaattgaagagcaactttatagcgaagattctcag
ctggaagatgtagaagtcgggattggtgctgaggcgatcgagcggttattacaggaactt
gcccttgaagaaattgcggaagaactcagagaaggcattgcaaactccaagggacaaaaa
cgcgctaaattgatcaagcgtctgcgggtaattgataacttcattgccactggtgctcgc
cctgagtggatggtgttgaacagtattcccgtcattccacctgatttgcgcccaatggta
caactcgatggtggacgttttgcgacgtctgatttgaatgatttgtaccgccgggtaatt
aaccggaataaccgtctcgcccgtctacaggaaattcttgcccctgaaatcattgtccgt
aacgaaaaacggatgttgcaagaggcggttgatgccctgattgataatggccgtcgtggt
cggacggtggtgggtgcgaataatcgtcccctcaagtctctgtcggacattattgaaggg
aagcagggtcgttttcgtcaaaaccttctgggtaaacgggttgactattcgggtcgttcg
gtcattgttgttggcccaaacctcaaaatttatcaatgtggtctgccccgggaaatggcg
atcgagctgttccagccttttgtgattcaacgcttgattaagagcacgattgtcagcaat
atcaaggcggcgaagaagctgattcaacggggagatgaaagtgtttgggatgttttggcg
gaggttatcaccggacaccctgtgatgctgaaccgggcaccaaccctccaccgtctgggg
attcaggcttttgagccgattttggtggaaggtcgcgcgatccaactccatccccttgtc
tgtcctgcttttaacgcggactttgacggtgaccaaatggccgtccatgtgccgctgtcc
ttggaagctcaagcagaggcacgtctacttatgttggcttgccataatattctgtctccg
gcaacgggtaaaccgattgtggcaccatcccaggacatggttttgggttgttattatctg
acggcagaaaaccctggggcacaacggggtgcgggacgctactttagcagtatggatgat
gcgttgcgtgcctatgagcagggggatgtggatttgcatgcctatgtctggctccgttat
ttgggtgatgttgaaacccatgaggctgatgataaggtgcttgagtcccaaactttagag
gatggttctgtgctaaaggtttaccgtgagcgtaaggtacgggaaacagcggatggagca
atgattagtcaatttatccgcaccaccccaggccgaattatctataacaagacgattcag
aatgctctggatctgacggagcgggtgctaccggagggactacctgtttaa
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