Synechococcus sp. NIES-970: NIES970_20370
Help
Entry
NIES970_20370 CDS
T09762
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
synn
Synechococcus sp. NIES-970
Pathway
synn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
synn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES970_20370 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synn03021
]
NIES970_20370 (rpoB)
03400 DNA repair and recombination proteins [BR:
synn03400
]
NIES970_20370 (rpoB)
Enzymes [BR:
synn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES970_20370 (rpoB)
Transcription machinery [BR:
synn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES970_20370 (rpoB)
DNA repair and recombination proteins [BR:
synn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES970_20370 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RelB
Motif
Other DBs
NCBI-ProteinID:
BAW97091
LinkDB
All DBs
Position
complement(2124384..2127695)
Genome browser
AA seq
1103 aa
AA seq
DB search
MTHITQSLLPDLIDIQRSSFRWFLEKGLIEELNSFSPITDYTGKLELHFIGEKYRLKEPK
YSMSEAKSRDSTYGVQMFVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAERVIV
NQIVRSPGVYYKSEVDKHGRRTYSASLIPNRGAWLKFETDKNSIVWVRIDKTRKLSAQVL
LKAMGLSDSEILDALRHADFYQKTLEKEGNPSEEEALLELYRKLRPGEPPTVTGGQQLLE
SRFFDNKRYDLGKVGRYKINKKLRLNIPDTVRVLTPTDILSAIDYLINLEFDTGNIDDID
HLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSEAEALTPASLVNPKPLVAAIKEFF
GSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPTQYGRICPVETPEG
PNAGLIGSLATYARVNEYGFIETPYYKVENGKILFDQGSVYLTAGEEDDLRVAPGDVPRD
EDGNILGETVPVRYRREFSTTTPEQVDYVAVSPLQIVSVATSLIPFLEHDDANRALMGSN
MQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRCDGVVTFVDATVIRVQPTGEGTEDA
AEIVYPLQKYQRSNQDTCLNQRPLVDIGEDVVAGQVLADGSATEGGEIALGQNVTVAYMP
WEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRNLD
EQGIIRIGAWVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKG
RVVDVRVFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPIEDMP
YLPDGSPVDIVLNPLGVPSRMNVGQVFECLLGWAGEHLNARFKMMPFDEMHGAEASRETV
HGKIREAAHKPGKEWVFNEAEPGKIQVYDGRTGEPFDRAVTVGKAYMLKLVHLVDDKIHA
RSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDMQGRNEAL
NAIVKGKPIPRPGTPESFKVLMRELQSLGLDIAVHKVEAADDGTSRDVEVDLMMDNQRRA
PNRPTYESVTDEEQEDLVEEAAD
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgactcatatcacccaaagcctgcttcccgatctgattgatattcaacggtcaagcttt
cgctggttccttgaaaaagggttaattgaggagctcaacagtttctcacccatcaccgac
tataccggaaagttagagctgcactttattggggaaaaatatcgcctcaaagaacccaag
tacagcatgagtgaggcgaaaagtcgggatagcacctacggtgttcagatgtttgtaccc
accaggctcatcaacaaagaaactggtgaaatcaaagagcaggaagtttttattggcgat
ctgcctctgatgacggatcggggtacttttattatcaacggcgcagagcgcgtaatcgtc
aaccaaattgtgcgatcgcctggggtatattacaaatccgaagtcgataagcatgggcgg
cgtacttattctgcatccttaattccgaaccggggtgcttggttaaagtttgaaaccgac
aaaaacagcattgtttgggtcagaattgacaaaacccgaaagctttcagcccaggtactc
ctcaaagccatgggactctctgatagcgagattctcgacgccctccgccatgctgacttt
taccaaaaaaccctcgaaaaagaagggaatcccagcgaagaagaagccttgctcgaactc
taccggaagctgcgtcccggtgagccgcccacggtgaccggtggtcagcaactattagaa
tcgcgcttctttgacaacaagcgctatgacctaggtaaagttggccgctataagatcaat
aaaaagctccggcttaatatccccgacactgttcgggtgctaacacccacagacattctt
tcggcgatcgactacctaatcaacctcgaatttgacaccgggaacatcgatgacatcgat
cacctcggtaaccgccgtgtgcgttccgttggtgaactactccaaaatcaggtgcgagtc
ggtctaaatcgcctcgagcgcatcattcgtgaacgcatgaccgttagcgaagcagaagcc
ctcacccccgcctctttggtgaacccgaagccccttgtggcagcgattaaagaattcttt
ggttcctcgcagctctcccagttcatggaccaaaccaaccccctcgcagagttgacccac
aagcgtcgcctctcggcccttggccccggtggtctgacccgcgaacgggcaggttttgcc
gtgcgtgatattcacccgacccagtatggtcgtatctgcccagtcgaaaccccagaaggt
cccaacgcaggtctaatcggttctctcgctacctatgctcgggtcaacgaatatggtttc
atcgaaaccccttactacaaagtcgaaaacggtaaaattctcttcgaccaaggttccgtt
tatctcacagctggagaagaagatgatttgcgggttgcccctggggatgtaccccgggac
gaagacggcaatatccttggggaaactgttcctgtccgttaccgccgagaattttctacc
acaactccagaacaggtagattatgtagctgtttcgcccctgcaaatcgtgtccgttgcg
acctctctgattcctttcttggagcatgacgacgctaaccgtgctcttatggggtcaaac
atgcagcggcaagctgtacctctccttcgtccggaacgtccccttgtcggtactggttta
gaagcgcaagctgcccgagactctgggatggttatcgtttcccgctgtgatggtgttgta
acttttgttgatgctaccgtgattcgtgttcaacccactggggaaggcacagaagacgcc
gctgaaattgtctatccattacaaaaatatcaacgctctaaccaagatacctgcctcaat
cagcgtccccttgtagacattggagaagacgtggtggcggggcaggtgttggccgatggc
tctgccacggaaggaggtgaaatcgcccttggtcaaaacgttaccgtcgcttatatgccc
tgggaaggctataactacgaggatgcaatcctaatcagcgagcggctcgtttatgacgac
gtctacactagtattcacatcgaaaaattcgagattgaagcccgccagacgaaactaggc
cctgaagaaattacccgtgagatccccaacgttggagaagatgccctccgtaacctcgat
gaacaggggattattcgcattggtgcttgggtcgaatctggagatattctggtcgggaaa
gtcaccccgaaaggggaatctgaccagccccccgaagaaaaacttctccgggcaatcttc
ggtgagaaggccagagatgtacgggacaattccctgcgagttcccaatggtgagaaaggc
cgagttgtagatgtgcgcgtctttacccgtgaacagggcgatgaactgccccctggtgca
aacatggttgtccgtgtttatgttgcccaaaaacggaagatccaagtgggtgacaagatg
gcaggtcgccacgggaataaagggattatctcgcggatcttaccgattgaggatatgccc
tacctccccgatggttcccctgtggatattgtcctcaatcctctaggtgtgccgtcccgg
atgaacgtgggtcaggtttttgaatgtctattgggttgggccggggaacaccttaatgcc
cgctttaagatgatgccctttgatgagatgcacggtgctgaggcctctcgcgaaacagtc
catggcaagattcgagaagcggcccacaaaccagggaaagagtgggtctttaacgaagca
gaacctggcaaaattcaggtctatgatggccgtaccggggagccttttgaccgagctgtc
accgtcgggaaagcgtatatgctgaagttagtccacttggtggatgacaagatccatgct
cgttccactggcccttactccctcgtgactcaacagccccttggtggtaaagcccagcag
ggtggtcagcggtttggggaaatggaagtttgggccttggaagcttacggggctgcctac
actctccaggaacttctgacggtcaaatcagatgatatgcagggacggaacgaggctcta
aatgcgattgttaagggcaaaccgattccccgtcctggcacaccagagtctttcaaggtc
ttgatgcgtgagttgcaatcccttggcttagacattgctgtccacaaggtagaggccgct
gatgatggtacaagtcgggatgtggaggttgatttgatgatggacaatcagcgccgcgcc
cccaatcgaccgacctatgaatccgtgactgatgaggagcaagaagatttagtcgaggaa
gctgcggactaa
DBGET
integrated database retrieval system
