Synechococcus sp. NB0720_010: LY254_02800
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Entry
LY254_02800 CDS
T10498
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
syno Synechococcus sp. NB0720_010
Pathway
syno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LY254_02800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syno03019
]
LY254_02800
Enzymes [BR:
syno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LY254_02800
Messenger RNA biogenesis [BR:
syno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LY254_02800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UPH91321
LinkDB
All DBs
Position
complement(509822..511120)
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AA seq
432 aa
AA seq
DB search
MDEEQLAESPFTALGLGRPIVEAVLQKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKT
AGFTLPMLERLRHGPHARGRIVRSLVLTPTRELAAQVADNVKAYSRHLDLRSDVVFGGVK
INPQITRLQAGADVLVATPGRLMDLVQQGAISLDRVEILVLDEADRMLDMGFIRDIQKIL
RLLPAKRQNLLFSATFETSIRRLATGLLHEPVQLQVTPENRTAATVEHILHPCDMARKPD
LLCHLIASNDWQQVLVFSRTKHGANRVADRLSAEGMAAAAIHGNKSQGARTRALAGFKSG
ELRVLVATDIAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHSGHAVSLVAAEEH
ELLRAIERLTGKKLPKQEIPGFEPTVLSAPPLDLSGGRGRSSRGGGGNRGVGNRGGVSRS
GRPAARSSSRRP
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
gtggatgaagagcagctggcggagtccccgtttacggcccttgggctcgggcgtccgatc
gttgaggccgttctgcagaagggctacagccagccctcctccattcagcagcaatgcatc
ccggcggttctggcgggccgcgatgtgatggcagcggcccagaccggcaccggtaaaacc
gccggtttcaccctgccaatgctggagcgcctgcgccatgggccccacgcccgcgggcga
attgttcgttcgttggtgctgacccccacccgcgagctggcggcccaggtggccgacaac
gtcaaggcctactccaggcacctggacctgcgcagcgatgtggtctttggcggggtcaag
atcaaccctcagatcaccaggctgcaggctggcgccgatgtgttggtggccacgccgggc
cgcctgatggacctggtgcagcagggggcgatcagcctggatcgcgtcgagatcctggtg
ctggatgaagcggatcggatgctcgacatgggcttcatccgcgacatccaaaaaatcctg
cggctgctgccggcaaagcgccaaaacctgctgttctcggccaccttcgagacctcgatt
cgtcgcttggcgacgggtctgctccatgagcccgtccagcttcaggtcacccccgaaaac
cgcacggcggcaacggttgagcacatccttcacccttgcgatatggcgcgcaagccggat
ttgctctgccatctgatcgccagcaatgactggcagcaggtgctggtcttctcccgcacc
aagcatggtgcgaatcgcgtcgccgacaggctcagtgccgaaggcatggcggcggcggcg
atccatgggaacaagagccaaggggcccgcacccgtgccctggcggggttcaagagcggc
gagctgcgggtgttggtcgccaccgacatcgccgcccgcggcattgacattcatcagctg
ccccatgtggtgaatctcgatctgccgaaccaggccgaggactacgtccaccgcatcggc
cgcaccggccgggcgggccacagcggccatgccgtctccctggtggccgctgaagagcat
gagctgctgcgggcgattgaacgcctgacgggcaaaaagctgcccaagcaggagatcccg
ggctttgagcccacggtgctctcggctcccccgctggatctgagcggcgggcgcggccgc
tcgagccgtggtggtggtggcaaccgcggtgttggcaatcgcggcggtgtcagccgcagc
ggacgtcccgcggcacgctcctcctcccgccgcccttga
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