Synechococcus sp. NB0720_010: LY254_03675
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Entry
LY254_03675 CDS
T10498
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
syno Synechococcus sp. NB0720_010
Brite
KEGG Orthology (KO) [BR:
syno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syno03016
]
LY254_03675
Enzymes [BR:
syno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LY254_03675
Transfer RNA biogenesis [BR:
syno03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LY254_03675
Prokaryotic type
tRNA splicing ligases
LY254_03675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UPH90808
LinkDB
All DBs
Position
complement(675278..676516)
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AA seq
412 aa
AA seq
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MDLTHWKQIDQYCWSYSDAGSFPLIAYGDQQCLLRMHPQVLEQAWTLSQLPGLSTSVTLL
PDAHPGFAMPNGCVVGFDANHGGAILSGDIHLDHAYGVRCLKTGLQLSQLEPKLESLSET
LQSGLAAGLIQRGLAHCNQDSFDLMLRSGAHWAVEEGWGFLEDLQYCEHQGLMPSADPGA
VSAHAKDYVRQRLKHFGNGNHHVELHVVEDVYDLATASHFGLHVTSIVVVIEAGSAGLSQ
QTCRDNLSALHGLTWTPLHSELGHQLLASIHVSLNCALAYRQILTHLVRDVFRQYWPDLC
LPLLVDASHNSVQEESHLVGHDPRHLWVQRQGSTRAFGPCHGHVPDLYRQVGQPVLLGGG
MGSFTEVLCGVDSSEQRSLSTSCWNINGSLLSEKAGLVRRVARLRPLRCIQG
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
gtggatctcactcattggaagcagatcgaccagtactgctggtcatattccgatgctggt
tcgttcccactgatcgcctatggcgaccagcagtgccttctccgcatgcatcctcaggtc
cttgagcaggcttggactctgtctcaattgcctggtctttcaacctctgtgactctgctt
cccgatgcccatccagggtttgcaatgcccaacggctgtgttgtcggtttcgatgccaat
catggcggtgcgatcctttctggtgacattcaccttgatcatgcctacggcgttcgctgc
ctaaagacggggctccaactctcgcaacttgagccaaagcttgagtccctctctgaaacg
ttgcaatcgggactagctgcaggattgattcaacgtggtctcgcccattgcaatcaagac
tcttttgatctgatgttgcgaagtggagcccattgggctgtagaggagggttggggtttt
cttgaggatcttcaatattgcgaacatcaaggcttgatgccttctgctgacccaggcgca
gtgtccgctcatgcaaaagactacgtacgacagcgtctaaaacattttggaaatggcaac
caccatgtagagcttcacgtggtagaggatgtctatgacctagcaaccgcatcccatttc
ggcttgcacgtcacctctatcgttgtcgtgatcgaggctggttcagctggcctcagtcaa
cagacctgtcgagacaacctttccgcactgcatggtctgacctggacacctttgcactca
gagttaggtcaccagttgctcgcctccatccacgtttctcttaattgcgctcttgcttat
cgacagatcctgacgcacctagtccgagatgtttttcgccagtactggcctgatctctgt
ctgcccctacttgttgatgcttcgcacaacagtgttcaggaggaatcccatcttgtcggt
catgacccccgtcatctttgggtgcagcgacaaggttccactcgtgctttcggcccctgt
catggccacgtcccagatttgtaccgtcaggttggtcaaccagttctcttgggtggggga
atgggatcttttactgaggttctctgcggtgttgattcatctgaacagagatcattgtcg
acgagttgttggaatatcaatggatcgctccttagcgagaaggctggcttggttaggcgt
gtcgcacgtctaaggcccctgcgttgtattcaaggttga
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