Synechococcus sp. NB0720_010: LY254_03855
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Entry
LY254_03855 CDS
T10498
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
syno Synechococcus sp. NB0720_010
Pathway
syno03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LY254_03855 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syno03400
]
LY254_03855 (recD)
Enzymes [BR:
syno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LY254_03855 (recD)
DNA repair and recombination proteins [BR:
syno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LY254_03855 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
Viral_helicase1
UvrD-helicase
SH3_13
AAA_22
PhoH
AAA_25
DEAD
nSTAND3
AAA
AAA_28
DAP3
SLFN-g3_helicase
AAA_5
T2SSE
AAA_7
bpMoxR
TrwB_AAD_bind
TPGS1_C
ATPase
Motif
Other DBs
NCBI-ProteinID:
UPH90843
LinkDB
All DBs
Position
709715..711334
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AA seq
539 aa
AA seq
DB search
MSNLSAAVLDSLQRLLPPQRGSALLQPMVQALIEALEQGELGLDLRGPQPDGVPPEDWPA
AAVSALEEAGWLAGPEAPIVQDGLVLRWRRWHEQLQHCLSALEQRAQRRRPLQESERKAA
LAAAAQAGLDPRQCQAVSAALGQDLVLLTGGPGTGKTSTVVQMLAACLHQTPSLRIHLAA
PTGKAAARLASSVSHGSQGLDPTLQSLPSSTLHRLLEAQGELRFGRNRRHPLELDLLVVD
ELSMVDLPLMAALLEALPAEARLLLVGDANQLPPVGTGALLEELCRPERLSLLGAAAVEL
RTTYRNDGAIAELAEQLRQQPNAVQGDLLAALQPSLQALTASDNVSWLEASSRSLPTPLL
EALQQHAAALRQRCQALEWQGGRPSSEQSDALLAQLEELVVLSPLRLGPWGVEAVHRALL
GDLAKSGPLHWPPGTPVLNRLNRADQGLANGDIGVVVQHHSERRVLMPGQRLLHPAQLSG
AEPAFALTVHKSQGSQYRTVLFLLPANRALDPRLIYTGLTRAQRQATLITPVGAAKKPT
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacctgagcgccgcagtcctcgacagcctccagcggctgctgccgccccagcgc
ggcagtgcccttctgcagcccatggtgcaggccctaatcgaggcactcgaacaaggcgag
ctggggcttgatctacggggcccacagcccgatggagtcccccctgaggactggcccgct
gctgcggtctcggccctggaggaggccggctggctcgcgggcccggaagcaccgatcgtt
caagacggactggtgctgcgctggagacgctggcatgagcaactccagcactgcctcagc
gccctggagcagcgcgcccaacgccggcgccccctgcaggaaagcgagcggaaagcggcc
ctggccgcggcggcgcaagcgggcctggacccacgccaatgccaagccgtctcagcggcc
ctggggcaggacctggtgctgctcaccggcggcccgggcaccggcaagacctcaaccgtt
gtgcagatgttggccgcctgcctgcaccagacaccgtcgctgcggattcacctggcggca
ccaacggggaaagctgcagcccgcctggcgagctccgtcagtcacggcagccagggtctc
gatccaacgcttcagagcctccccagcagcaccctgcaccgtctgctggaggcccagggg
gagctgcgctttggccgcaatcgccgccatcccctggagctggatctgctggtggtcgat
gaactgtcgatggttgatttgccgctgatggcagctctgctggaggccttaccggcggag
gcgcgactgctgctcgtcggcgacgccaaccaactgccgcccgttggaaccggagcttta
ctggaagagctctgccggccggagcgactcagcctgctgggggcagccgccgtcgaattg
cgcaccacctaccgcaacgacggcgcgatcgccgagctggccgagcaactccggcaacag
ccgaatgcagtgcagggggacctgctcgccgccctgcaacccagcctccaggccctgacc
gccagcgacaacgtgagctggctcgaggcctccagccgcagcctgccaacacccctgctg
gaggcgctgcaacagcacgccgcggccctgcgtcaacgctgccaagccctggagtggcaa
gggggaagacccagcagcgaacaaagcgacgccctgctggcccaactggaggaactggtg
gtgctcagtcccctccgcctcgggccctggggggtggaggcggtgcaccgcgctctgctg
ggcgacctcgccaaaagcggtcccctgcactggcccccaggcaccccagtcctcaatcgc
ctcaaccgcgccgaccaaggccttgccaatggcgacatcggtgtcgtcgttcaacaccac
tcggagcgccgggtcttgatgccgggccagcggctcctgcacccggcgcagctcagtgga
gcggagccggcctttgcgctgacggtgcataagtcccagggcagccaatacagaaccgtg
ctgttcctgctgccggcgaaccgggctctggatccgcgcctgatctacaccggcctgacc
cgcgcgcaacggcaggccaccttgatcacaccggtgggcgcagccaagaaaccgacctag
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