Synechococcus sp. KORDI-49: KR49_02315
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Entry
KR49_02315 CDS
T03345
Name
(GenBank) hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
synr
Synechococcus sp. KORDI-49
Pathway
synr03410
Base excision repair
synr03430
Mismatch repair
synr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
synr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KR49_02315
03430 Mismatch repair
KR49_02315
03440 Homologous recombination
KR49_02315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synr03400
]
KR49_02315
DNA repair and recombination proteins [BR:
synr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KR49_02315
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KR49_02315
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KR49_02315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AII45297
UniProt:
A0A076H8Z0
LinkDB
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Position
371813..373705
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AA seq
630 aa
AA seq
DB search
MTHHSPLWSWSLPEVITPSPLAEVDLPLPLRSLLQRRGIRTVEAAEHLLDPPDLPDPEQE
FPDLATAAARLARACRGGESLAICGDYDADGMTSTALLIRALRPLGADAVAAIPSRMDDG
YGLNTGMVERLQAQGIRLLVTVDNGVAAVAALEKAIELDVEVIVTDHHTIPAQRPPMAAL
IHPATTPESSPYRGLAGVGLAYVLAEAVASRLKRPEAVATARDLFCIGTVADMAPLTGAN
RRWLRDGLRQLHRSRCEGLQALQRLSGLGDRPLRSDDIGFQIAPRINAVGRLGEPSLVVD
LLTVEDPEAAMALARRCDDYNRQRRDLCNAIEAEAVALVEADRGTVPPFLLLAQGHWHHG
VIGIVAARLVERYHRPAALLAGEGDGRLRASVRAPSGFAVDAALNSCSDLLERFGGHPAA
GGFTVAAEQVHPLQERLNSLAEDWLSRQGQGIPIRPDALLSLEQVNWDLWSALQRLEPFG
IGHETPLFWSRDCRVTESRTMNGGHLALKLSQGSAERRAVAWRWSDQRSVPSRCDVAFRI
NLNRWQGEQRLQLDVKALRPHSDSITLCRGTNRYTAARNGEGLTLSNDQGRSIEARVPAE
EPLNCRDPLAQNRQVLHLLEEASLALGLRP
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
ttgacgcaccattcacctctctggagctggtccctgccggaggtgatcacaccgtccccg
ctggcggaggtggatctgcccctgccgttgcggagcctgctgcaacgacggggcatccga
acggtggaagcagcggaacacctgctcgatccgccggatctgccggatccggaacaggag
ttcccggatctggcaacagcggcagcacgcctggcgcgggcctgcagaggcggtgaatcc
ctggcgatctgcggggattacgacgccgatgggatgacgagcacagccctgctgattcgc
gccctccgcccccttggagcggacgctgtggcagcgatcccttcgcggatggatgacggt
tacgggctcaacaccggcatggtcgaacgcctgcaggcccaggggatccgactgctggtg
accgttgacaacggagttgcagcggtagcggccctggagaaggcgatcgaactcgatgtg
gaggtgatcgtcaccgatcaccacacgattcccgctcagcgaccgccgatggcagcgctg
attcatccggccacaacccccgaaagctcgccctaccgaggactggcgggcgtcggactg
gcctacgtgctggcggaggcggtggcatcccgactgaagcgtccggaagcggtggcgacg
gcccgggatctgttctgcatcggcaccgtcgccgacatggctcccctcaccggagcgaac
cgtcgctggctgcgggacgggctgagacaactgcaccgcagtcgatgtgaagggcttcag
gcgctgcaacgcctttcagggcttggtgaccggccgcttcgcagcgatgacatcgggttt
cagatcgctccgagaatcaacgccgtggggcgcctcggggaaccgagccttgtggtggac
ctgctgacggtggaggaccctgaagcggccatggctctggcacgccgttgtgacgattac
aaccggcagcgccgggatctgtgcaacgccatcgaggccgaagccgtggctctggtggaa
gcagaccggggaacagtgccgccgttcctgctgctggctcagggacactggcatcacggc
gtgatcggcatcgtggcggcgcgcctggttgagcgctatcaccggccggccgccctgctg
gcgggagagggggatggccgcctgcgggcctccgtgcgggcaccatccggatttgccgtg
gatgccgccctgaacagctgcagtgacctgctggaacgtttcggaggtcatccggcagcc
ggtggcttcaccgtggcggcggagcaggtgcatccactccaggaacggctcaactccctg
gcggaggattggctgagccggcagggacagggcattcccatccgccctgacgccctgctg
agccttgaacaggtgaactgggatctctggagtgcgctgcagcgcctggagcccttcggc
atcggccatgagacgcccctcttctggtcgcgggactgtcgggtgacggaatcacgcacc
atgaacggtggtcatctggctctgaagctgagccagggatccgccgaacgaagggctgtc
gcctggcgctggtcagaccagcgttccgttcccagccgctgtgatgtggccttccggatc
aacctcaatcggtggcagggggagcagcggctgcaactcgatgtgaaagcactcagaccc
cacagcgacagcatcacgctctgccgaggaaccaaccggtacaccgccgcccgcaacggg
gaaggtctgaccctcagcaacgaccagggacgctcgatcgaggcacgcgtgcccgcggag
gaaccgctgaactgccgggaccctctcgctcagaaccgacaggttctgcaccttctcgag
gaggcgagcctggcccttggactgaggccctga
DBGET
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