Synechococcus sp. KORDI-49: KR49_11530
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Entry
KR49_11530 CDS
T03345
Name
(GenBank) helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
synr
Synechococcus sp. KORDI-49
Pathway
synr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KR49_11530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synr03019
]
KR49_11530
03400 DNA repair and recombination proteins [BR:
synr03400
]
KR49_11530
Enzymes [BR:
synr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KR49_11530
Messenger RNA biogenesis [BR:
synr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KR49_11530
DNA repair and recombination proteins [BR:
synr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KR49_11530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AII47028
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All DBs
Position
2095608..2097089
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AA seq
493 aa
AA seq
DB search
MDRLEQSLQEHFGWSSFRAGQRPVVEAVLAGRDALAVLPTGGGKSLCYQLPALVRGGLVV
VISPLVALMEDQVLQLQRRGIAAACLHAGLAPDRRRKALSALRDESLRLLYLAPERLQGE
ATRQMLENHSSEGRLVALAVDEAHCISAWGHDFRPDYRRLGQIRSLCPGVPMLALSATAA
PRVRADIIRLLDLRSPSVQVSSARRSNLRYAMRRRPRDPMPMVLEALKASRGATLIYART
RRSVERWAERLQEQEIPATPYHAGLDPEARQLALTQFLDQERPVLVATVAFGMGVDRGDV
GLVLHLDLPSTPEGYLQESGRAGRDGLPADCLVLFSPGDRTSLGWAMQAGARGEISADER
SRLDLAQQQLRRMEAVAEGEMCREQALLLTVGELVQPCGRCDRCTATPDRRDWSTQAQTL
LEHLAEKDGTDLRRLGERLALVEPGRNERWTWLARRLVQEELIRESDDGVQRLYLRDSGR
RFLDDPWPLDYAA
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttggaccgtctggaacagtcgctccaggaacatttcgggtggtccagcttccgggctggg
cagcgccctgttgtggaagccgttctggcggggcgagacgccctggcggtgctgcccacc
ggcggcggcaaatcgctctgctatcagctgcccgctctggtgcgcggtggcctcgtcgtg
gtcatctctccccttgtcgccctgatggaggatcaggtgctgcagctgcagcgacgcggc
atcgccgcagcctgtctgcatgcgggtctggctcccgatcgccgcaggaaggctctgagc
gcactgcgggatgaatcgctgcgtcttctctacttggcacctgagcgcctgcaaggggag
gcgacccggcagatgctcgaaaaccactccagcgaggggcgactggtggcactggcggtg
gatgaggcgcattgcatcagcgcctgggggcatgacttccgcccggactaccgacggctc
ggtcagatccgcagtctctgtccgggagtgccgatgttggctctcagtgccacagcagcc
ccccgtgtgcgggcggacatcatccgcttgctggacctgcggagtccttcggtgcaggtg
agctcagcgcgtcgcagcaatcttcgctacgccatgcgccgacgcccccgtgacccaatg
ccgatggtgctggaggctctgaaggcctccagaggggccaccctgatctacgcccgtacc
cggcggtccgtggagcgctgggccgagcggttgcaggagcaggagatcccggcaacgcca
taccacgccggactggatcctgaggcgcgccagctcgctctgacccagtttctcgaccag
gagcgccctgtgctggtggccactgtggcgttcggcatgggagtggatcggggcgatgtc
ggtctggttctgcatctcgatctgccttcgacgccggagggatatctgcaggagtcaggt
cgagccgggcgtgatggtctgccggccgactgtctcgtgctgttttcaccgggggacagg
accagcctcggctgggcgatgcaggcgggggctcggggcgagatttcagcggatgagcgc
agccgactcgatcttgcccagcagcagctgcggaggatggaggcggtggccgaaggggag
atgtgccgggagcaggctctgttgctgacagtgggcgaactcgttcaaccctgcggccgt
tgtgatcgctgcaccgcaaccccggatcggcgcgactggtcaactcaggcccagaccctg
cttgagcatctggcggaaaaggacggcacggatctgcggcgccttggggagcgtctggcc
ctggttgagcccggtcgcaacgagcgttggacctggctggcccgtcgtctcgttcaggag
gagctcatccgtgagagtgacgatggcgtccagaggctgtacttgagggacagcggacgt
cgcttcctcgatgacccctggccgctggattacgcggcttga
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