Synechococcus sp. KORDI-49: KR49_12510
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Entry
KR49_12510 CDS
T03345
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
synr
Synechococcus sp. KORDI-49
Brite
KEGG Orthology (KO) [BR:
synr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KR49_12510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synr03021
]
KR49_12510
Transcription machinery [BR:
synr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KR49_12510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Ndc1_Nup
Mitofilin
Motif
Other DBs
NCBI-ProteinID:
AII47212
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Position
complement(2286124..2287566)
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AA seq
480 aa
AA seq
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MSPSATKTAQPDIVLLANANGELKEVTSVSKAETKKAPAKARTSRSKSSSKDLSAAADEL
LAAADQASTDKAAKTSTSVKKAASKTATKKPAATKAAAAKAKPARSSAAKSKTGAKASAA
TAKAKDAASKEAVATVSPEEKAKAAAAEKEAKAKALASIKIGPKGVYTEDSIRVYLQEIG
RIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKHPDTKEWAALVEMPVIRFRRRLML
GRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA
TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTI
EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLS
PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagtccttccgccaccaagacagctcaaccggacatcgtcctgctggccaatgccaat
ggagagctgaaggaggtgacatccgtcagcaaggcggagacgaaaaaggcacccgcgaaa
gcacggaccagccgatcaaaatccagtagcaaggatctgagcgccgccgccgatgagctg
ctggcggcagccgatcaggcctcgaccgacaaggccgccaagacgtcaacctccgtgaag
aaggcagcctccaagacggcgacgaagaaacccgcggccacgaaagctgcggcagccaaa
gcgaagccggcccggagttcggccgccaagagcaaaaccggcgccaaagccagcgcagca
acagccaaagccaaggacgccgcctccaaagaagcggtagccacagtttctccagaggag
aaagcgaaggcagctgctgcggaaaaggaggccaaagccaaggccctggccagcatcaag
atcggtccgaagggggtctacaccgaagactccatccgggtttacctgcaggagatcggc
cggatccgtctgctgcggccggacgaggagattgaactggcgcgcaagatcgccgacttg
ctccatctcgaggagttggcagcacagttcgaaagcgacaacggcaagcatcccgacacc
aaggaatgggctgctctggtggagatgccagtgatccgtttccgacgccggctgatgctg
gggcgtcgggccaaggaaaaaatggtgcagtcgaacctgcgcctggtggtctcgatcgcc
aagaagtacatgaacagaggcctgagcttccaggatctgattcaggaagggagcctcggc
ctgatccgtgcggctgagaagttcgatcacgagaagggctacaagttctccacctatgcc
acctggtggatccgacaggcgatcacccgcgccatcgcggaccagagccgcaccatccgt
cttcccgttcacctttacgagacgatttcccggatcaagaaaaccaccaaggtgctgtcc
caggaattcggtcgcaaaccgacagaagaggagatcgccgaatcgatggagatgaccatc
gagaagctgcgtttcatcgccaagagcgctcagctgccgatttccctggaaacaccgatc
ggaaaggaggaggactcccgcctcggcgatttcatcgaagccgacatcgagaatccagag
caggacgtggccaagaatcttcttcgcgaagatctcgaaggtgtgctcgccaccctcagc
ccaagagagcgcgatgtgctgcgtctgcgctacggcctggatgacggccgcatgaagacc
ctggaggagatcggacagatcttcgatgtgacgcgcgaacggatccgtcagatcgaggca
aaagccctgagaaagctgcgccaccccaaccgcaacggcgttctcaaggaatacatcaag
tga
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