Synechocystis sp. LKSZ1: OLK001_03020
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Entry
OLK001_03020 CDS
T10519
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syns Synechocystis sp. LKSZ1
Pathway
syns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLK001_03020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syns03019
]
OLK001_03020
03400 DNA repair and recombination proteins [BR:
syns03400
]
OLK001_03020
Enzymes [BR:
syns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OLK001_03020
Messenger RNA biogenesis [BR:
syns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OLK001_03020
DNA repair and recombination proteins [BR:
syns03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OLK001_03020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
BFM38376
LinkDB
All DBs
Position
322491..323969
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AA seq
492 aa
AA seq
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MLLSFRPVSLSSLNPQIAPLLEKIWGYRSLRFPQGEVIDCLLKGQDALVVIPTGGGKSLC
FQLPALTQTGLTLVVSPLIALMENQVQELQAHGLPAACLHNELPRNQRRQTLQRLQQGQL
RLLYLSPETLLSPPLWELLCQPRLQLQGLMLDEAHCLVQWGDSFRPAYRRLGCLRQALQA
YNPSAKTMAIAAFTATADPATQAAIVTGLQLRNPQHFCLDPYRPHLSLKVQIVWTPRCRR
EQVAQFLKQQQGSGGLVYVRTRRDAMALADQLNTQGHRTAAYHGGLGASQRRQLEAQWLT
GDCPFVVCTNAFGLGVNKKNLRWILHYHPPLLLAEYLQEIGRAGRDLKPATCLTLVSEPT
GWLDSGDRQRQAFFLQQQVKLQQQAQALLPKIPPTGDLPSLKAQFPEVELSLALLHRQNR
LAWLDPFHYRLLPNQGNPENLKASLGREYQRMQHFLLTRDCRWHYLLQAFSSNPDPTLRC
GHCDNCLRAAHR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
gtgctcttgagttttaggccggtgagtctatcctccctcaatccccagattgcgcccctc
cttgaaaaaatttggggctaccgtagcctccgctttccccaaggggaggtaattgattgc
ctactcaagggccaggatgccctagtcgtgattcctacggggggcggtaaatccctctgt
tttcagttgccggccctgacccaaaccggcctgactttggtggtatcacccctgatcgcc
ctgatggaaaatcaggtgcaggaattacaggcccatggcctgcctgcggcctgtttgcac
aatgagctaccccgtaaccagcgtcgtcagaccctccagcgcttacaacagggccaattg
cgcctcctgtatctttctcctgaaaccctcctcagtccgcccctgtgggagctactctgt
cagccccgcctgcaactccagggcctgatgttggatgaggcccattgcctggttcagtgg
ggagattcctttcgtccggcctaccggcgtctaggttgtttgcgccaggccctccaggcc
tataatccctcagcgaagaccatggccattgcagcctttacggccaccgccgacccagcg
actcaagccgccatcgtgactggcctgcaattgcgcaatccccagcatttttgcctcgac
ccctaccgtccccatctgagcctcaaggtgcagatcgtttggacaccccgctgtcgtcga
gagcaagtggcccagtttttgaaacaacagcaaggaagtgggggcctcgtctatgtccgt
acccgtcgggatgccatggccctggccgatcagttgaatactcaaggccatcgtactgcg
gcctaccatgggggcctgggggccagccagcgacgacagttggaagcccagtggttaacc
ggagattgcccctttgtcgtttgtacgaatgcgtttggtctgggcgtaaacaaaaaaaat
ttgcgttggattctgcattaccatccgcctctgcttttggctgaatatctccaggaaatt
ggccgggccggacgggacttaaagcccgccacctgcttaaccctggtcagtgaaccaacg
ggctggctcgacagtggcgaccgtcaacgccaagccttttttctgcaacaacaggttaaa
ctccaacagcaggcccaggccctgctccccaaaattcccccgacaggggatttacccagc
ctcaaggcccagttcccggaggtcgagctctccctggctctcctgcatcgccagaaccgc
ctagcatggcttgatccctttcactaccgtcttttgcctaatcaaggcaatccagagaat
ctgaaggcaagcttaggccgagaataccaacggatgcagcactttcttttaacacgagac
tgtcgttggcattatctactccaggccttttcctccaaccccgacccaacactccgctgt
ggccattgcgataattgtttaagagccgctcaccgctag
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