Synechocystis sp. LKSZ1: OLK001_17410
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Entry
OLK001_17410 CDS
T10519
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
syns Synechocystis sp. LKSZ1
Pathway
syns03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syns00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OLK001_17410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syns03021
]
OLK001_17410
03400 DNA repair and recombination proteins [BR:
syns03400
]
OLK001_17410
Enzymes [BR:
syns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OLK001_17410
Transcription machinery [BR:
syns03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OLK001_17410
DNA repair and recombination proteins [BR:
syns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OLK001_17410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
KH_PARP14_8
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BFM39815
LinkDB
All DBs
Position
1910819..1911694
Genome browser
AA seq
291 aa
AA seq
DB search
MLEPLDRGQGITVGNALRRVLLSNLPGAAVTAIRIAGVNHEFATIPGVREDVLEIMLNMK
EVILKSYSDQPQIGRLVATGPVTVTAGHFDVPSELEVIDPNQYVATLVEGAKLEMEFRVE
RGTGYRAIERGKDDSSSLDFLQIDSVFMPVTKVNYSIEEVRIDGLGIKDRLTLEIWTNGS
VHPREALSEAAQIIAGLFAPLKDLNELETTQSDYQDEVNPESQIPIEELQLSVRAYNCLK
RAQINTVADLLDYSQEDLLEIKNFGQKSAEEVIEALQKRLGITLPLEKAKV
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
gtgttagaacccctagaccggggtcagggaattacggtggggaatgccctccggcgggtt
cttttatctaatttgcctggggcggccgtcacggcaatccggattgctggcgttaaccac
gagtttgccactatcccgggggtgcgagaagacgtcctagaaatcatgctcaacatgaag
gaagttatcctcaaaagctacagcgaccaacctcaaattggtcgtttagtggcgacgggc
cccgttacggtcacggcgggacattttgatgtgccttcggaattagaggtgattgacccc
aatcagtacgtggcaaccttagtggaaggggccaagctggagatggagtttcgggttgag
cggggcaccggctaccgagccattgaacgaggcaaggatgactcctcttccctggatttc
ctgcaaattgactcggtttttatgccggttacgaaggttaattacagtatcgaagaagtc
cggattgatggtctggggattaaagaccgtctgacgttggaaatctggaccaatggcagt
gtccatccccgagaggccttgtcggaagcagcccagattattgctggcctatttgctccc
ctgaaggacctcaacgaactggagacgacccaaagtgattaccaagatgaggtcaatccc
gaaagccaaattcccattgaggaactccaactttccgttcgtgcctacaactgtctcaag
cgggctcagattaataccgtagccgatctcctggactacagccaggaagacctactggaa
atcaaaaactttggccaaaaatcggcggaggaagtgatcgaagccttacaaaaacgcttg
ggaatcactctaccgctggaaaaagccaaggtctaa
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