Synechocystis sp. LKSZ1: OLK001_19250
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Entry
OLK001_19250 CDS
T10519
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
syns Synechocystis sp. LKSZ1
Pathway
syns03410
Base excision repair
syns03430
Mismatch repair
syns03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OLK001_19250
03430 Mismatch repair
OLK001_19250
03440 Homologous recombination
OLK001_19250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syns03400
]
OLK001_19250
DNA repair and recombination proteins [BR:
syns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
OLK001_19250
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
OLK001_19250
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OLK001_19250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
PYC_OADA
Motif
Other DBs
NCBI-ProteinID:
BFM39999
LinkDB
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Position
complement(2110458..2112182)
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AA seq
574 aa
AA seq
DB search
MPSLPCQRWKIAAPPADAVQAISQATGLAPLLAQVLVNRGITHPAQAAVFRDPEALALPN
PLTEFPDLEKSVELLSQAIQEKLPVAICGDYDADGMTSTALLLRALRFLGGQVDYAIPSR
MTDGYGINERIVREFAEAGIKLILTVDNGISAYGAIALAVELGLTVIITDHHDLPEILPP
AQAILNPKLLPATSLYHGLAGVGVAYILAVTTAQRLGQLTGLTSQLLELYTLGTIADLAP
LVGVNRRWLKRGLRLLPQSQILGVQALIKVANIQVGQKSLQPDDIGFQLGPRINAVGRIG
NPQWVIELLTTTNPDLAQEQAQRCEETNRQRQTLCETIEQEAIKLIESTPLLWQEDRVLL
VVHPHWHHGVIGIVASRLVERYGVPVFIATEEGEGQIRGSARGTEEFHIYEALDRCKDLL
GKFGGHRAAGGFSLAAANLEAFQQRLRTFAHEHLQPEQLRPLVKIDAEARFADLTFELRQ
QIDQLQPWGIGNEFPVFWTPQVRLLEQRRVGKEQKHLQLTLTDGPGQIKLKGIAWRWGEY
APLPACLDLAYKLQVNDYRGEKTLQLEIVGCRLP
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgccctctctaccttgccaacgctggaaaattgccgcgccgccggccgatgccgtccag
gccatcagccaagccacaggcctagcccccctactggcccaagtgctcgtcaatcggggt
attacccacccagcccaagcggcggtgtttcgtgacccggaggccctggctctgccgaat
cccttaacggagtttcccgacctggaaaaaagtgtggaactcctaagtcaggccattcaa
gaaaaactccccgtggcaatctgtggggattacgatgccgacggcatgaccagtactgcc
ttgcttctgcgggccctgcgtttcctcgggggccaggtggattacgccattcccagtcgt
atgaccgatggttacggcattaacgagcgtattgtgcgggaatttgcagaggcgggcatt
aagctgattttgacagtggataacggcatttctgcctatggggccattgccctagcggta
gaactgggtctaacggtaatcatcaccgaccaccatgacttaccggaaatcctgccccca
gctcaagcgattcttaacccgaagctattgccagcaacctccctttaccatggtctggct
ggcgtgggtgtggcctatattttggccgttaccaccgcccaacgcctcggtcaactgaca
ggcctaacttctcaactcctagagctatacaccctgggtacgattgcagacttagccccc
ctggtgggcgtgaatcggcgctggctcaaacgcggcctacgtctcctgccccagtcccaa
atcctgggtgtccaggccttgatcaaggtggcaaatattcaagtcggccaaaaaagcttg
caacccgacgatattggttttcagcttggcccccgcatcaatgccgtcggacggattggc
aatccccagtgggtaattgaactcctgactacaactaatcctgacctggcccaagaacag
gcccagcggtgcgaagagaccaaccgccaacgccagaccctgtgcgaaaccattgaacag
gaagccattaagctgattgaatcgaccccccttctctggcaagaagaccgagttttacta
gtggtgcatccccattggcaccatggggtgatcggcattgtggcctcgcgtctggtggaa
cgctacggcgtaccagtttttatcgccacagaggaaggtgagggccagattcgtggttcg
gctcggggcacggaggaatttcatatctacgaggccctggatcgatgtaaagacctgttg
ggaaaatttggaggccatcgggccgctggggggtttagtctagcggcggccaatttagag
gcctttcagcagcggttacggacgtttgcccatgagcatctccagcccgaacagcttagg
cccctggtcaagatcgatgccgaggcccgatttgctgatttgacctttgaattacgtcaa
cagattgatcaattacaaccctggggcattggcaatgagtttcctgtcttttggacaccc
caggtgcgcctgctggaacaacgacgggttggcaaggagcaaaagcatctgcaactcacc
ctaaccgatggccctggtcaaataaagctaaagggcattgcctggcgctggggagaatac
gcccctttgccggcctgtctcgacctggcctataagcttcaggtcaatgactatcgcggc
gaaaagacattgcaactggaaattgtcggttgtcgtcttccctag
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