Synechocystis sp. LKSZ1: OLK001_21410
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Entry
OLK001_21410 CDS
T10519
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
syns Synechocystis sp. LKSZ1
Brite
KEGG Orthology (KO) [BR:
syns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syns03016
]
OLK001_21410
Enzymes [BR:
syns01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OLK001_21410
Transfer RNA biogenesis [BR:
syns03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OLK001_21410
Prokaryotic type
tRNA splicing ligases
OLK001_21410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BFM40215
LinkDB
All DBs
Position
complement(2394371..2395552)
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AA seq
393 aa
AA seq
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MPYEALPLSTRVPVLSWANHDLGPEESRMARNVAQLPFVFKHVALMPDVHLGKGALVGSV
IATKDALIPAAVGVDIGCGMAALQTPYSANQLEGKLKRIRLDIEAAIPVGFQENKEVAKD
AQNWQQWDDFKQLHAGVQDQYKKASRQMGSLGGGNHFLEVCLDSEDKVWLMLHSGSRGIG
NLLAQCHINSAKNLARLAGSSLPDPDLAYFVKNTPEFAAYWHDLCWAQDYARRNREVMMA
RFKKIIEKQLAGGKPFKPKLLVNCHHNYAEEESHYGESVFVTRKGAVRARETDYGIIPGS
MGAKSFIVKGKGNAESYCSCSHGAGRLLSRTKAKNTFSLDDLIQQTAGVECRKDEGIIDE
IPGAYKPIEQVMANQADLVEIVATLKQVICVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgaagccctccctctttcaacccgcgtccctgtcttatcctgggccaaccat
gaccttggccctgaagaaagccgcatggcccgtaatgtggctcagcttccctttgtattt
aaacatgttgctctaatgcccgatgtccacctggggaaaggggccttagtcgggtcggtg
atcgccaccaaagatgccctcatcccagcggcggtgggggtggatattggctgtggcatg
gccgcgctacaaacgccctactctgctaatcagttggaaggcaaactcaaacgcattcgc
ctagacatcgaagccgccattcctgtgggtttccaggaaaacaaagaagtcgccaaggat
gcccaaaattggcaacaatgggacgactttaagcaactccatgcaggggtgcaagaccaa
tataaaaaagctagccgccagatgggttccctggggggcggcaatcatttcctcgaagtt
tgtctcgacagtgaagataaggtttggttaatgttgcactcggggtcacggggcattggt
aatcttctggcccagtgccatatcaatagcgctaaaaatctggctagattagctggatca
tctctacctgacccggatttagcctattttgtcaaaaatacgccggaatttgccgcctat
tggcacgacctctgctgggcccaagactatgcccgccgcaatcgagaggtgatgatggcc
cgtttcaaaaaaatcattgaaaaacagctagcgggaggtaaaccctttaaacccaaactc
ttggtaaattgccaccacaactatgccgaagaggaaagccactacggtgaatcggtgttt
gtaacccgcaagggggccgtccgggctcgagaaacggactacggcattattccgggttcc
atgggggccaaatccttcattgtcaagggcaagggcaatgccgaaagctattgttcctgt
tcccacggggctggccgtctgctctcgcgaaccaaggccaaaaatacctttagcctggat
gatttaatccaacaaacggcgggggttgaatgccgcaaggacgaaggcattattgatgaa
atcccaggggcctataaaccgattgaacaggtgatggccaatcaagccgatctggtggaa
atcgtcgcaaccctgaaacaggtgatttgcgtcaaaggttag
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