Synechocystis sp. LKSZ1: OLK001_23120
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Entry
OLK001_23120 CDS
T10519
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
syns Synechocystis sp. LKSZ1
Brite
KEGG Orthology (KO) [BR:
syns00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syns03016
]
OLK001_23120
Enzymes [BR:
syns01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OLK001_23120
Transfer RNA biogenesis [BR:
syns03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OLK001_23120
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BFM40386
LinkDB
All DBs
Position
complement(2597931..2599940)
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AA seq
669 aa
AA seq
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MEKGKLIEFRLQGERRLAVVDRPDGKKDWIVIDQGGQSHKIRPQRVEYEIPGGPYQPQEI
KVFWQNSQTYLDPSSLEVAWELLVEDGQAITPAELANILFSDQSPLFCYVAHSLLAEDKV
FFKQKGDAYEPRSLSQVEEIKHQQAVAEQREAERLGFLARLQQALQQPEPFQAWQDSDRP
KLEALERFVLQPELNHRQAQDLLDTLGRAQTPEAAFRLLVELGWWSTHENLFLRRSSYPR
QFSFKVSDLAHSLLHEPPADPDEQRLDLTHLKVYTIDDESTAEIDDGLSVEILGEDHHRL
WIHIADPSRLVRPNDDLDLEARKRSTSLYLPTGMISMFPPELATGPMSLIQGQLCPALSF
GVILSSEGEVLDFQIAASIVRPTYRLTYDDVDEMLHLGIQKEPEVGILAQAAKRRHHWRR
SQGAINIQMPEAVIKVNAAEEIYIQLLEGSPSRQLVAEMMILAGEVAGRYCQTHNLPVPF
RGQPQPELPPEEELLLLPAGPVRSCAVRRCMPRSEVSITPSRHASLGLDLYTQVTSPIRR
YTDLLSHFQIKAHLRGEALPFSSDQVQQILYSVVLSAQEATSVERQSNRYWSLEYLRRNA
DQAWQGLVLRWLREDEKLGLLLLEELGLELPHRFERPVSPGDRLIVQVSQADPHRDEIRF
RELSIPETL
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaaggcaagctgattgaattccggctccagggagagcgccgtttagccgtggta
gaccgtcccgatggcaaaaaggactggattgtgatcgatcaagggggccaaagccacaaa
attcgtccccagcgggtagagtatgaaattcctggcgggccgtaccaaccccaggagatt
aaagtcttttggcaaaatagccaaacctacctcgatccttctagcctggaggtggcctgg
gaattactggtggaggatggccaagccatcacccccgccgaattagccaatattttattt
tctgaccaatcccccctcttttgttacgtggcccatagtctgctggcggaggataaagtc
tttttcaaacagaagggagacgcctacgaaccccgttccctgagtcaagtcgaagaaatc
aaacatcaacaggccgtggcggagcaacgggaagccgagcgtctaggatttttagcgcgt
ttacagcaggccctccagcaacctgagccgtttcaggcctggcaagatagtgaccgaccc
aaacttgaggccctggaacgttttgtcctgcaaccagagttaaatcatcgtcaggcccaa
gacctcctggataccctaggacgggcccaaacccctgaagcggcctttcgtctcttggta
gaattaggctggtggagtacccacgaaaatcttttcctacgtcgaagttcctatccccgc
caattttcctttaaggtatccgacttggcccactctcttctccatgaaccgcccgccgat
cccgacgagcaacgcctagacctaacccatctcaaggtctatacgattgatgatgagagt
acggcggaaatcgatgatggcctgagcgtggagatcctaggagaagaccaccatcgtctg
tggattcatattgccgatcccagccgcctagtccgccccaatgatgatttggatctggag
gcccgcaagcgcagtaccagcttgtacttacccacgggcatgatttccatgtttcccccg
gagttggccaccgggcccatgagtttaattcaagggcaactctgcccggccctgagtttt
ggggtaattttatcctccgagggcgaggtacttgactttcaaattgccgccagtatcgtc
cggccgacctatcgccttacctacgatgatgtggacgaaatgttgcatctcggtattcaa
aaggagccggaggtggggatcttggcccaggcggctaaacgacgacaccattggcggcgt
tcccagggagccattaacatccagatgccggaggcggtgattaaggtcaatgcggcggag
gaaatttacattcaactcctagaaggatctccctctcggcaactcgtggccgaaatgatg
attctagccggagaagtggctggtcgctactgccaaacccataatcttcccgtgcccttc
cgaggccaaccccaacccgaactaccgcccgaagaagaactgcttctccttcccgctggc
cccgtccgttcctgtgcggtacgacgttgtatgccccgtagtgaggttagtattacccct
tcccgtcatgccagtctgggcctagacctctatacccaagtgacttcgcccattcgtcgc
tataccgatctgctgtcccattttcaaatcaaggcccatctccggggtgaggccctgccg
ttttctagcgaccaagtccaacaaattctctacagtgtcgtactatcggcccaggaagcc
acctctgttgagcgtcaaagtaaccgctactggagtttggaatatctgcggcgcaatgca
gaccaggcctggcagggattggttctgcgctggttacgggaagacgaaaaattgggccta
ctgctgctagaagaattaggtctagaattaccccaccgttttgagcggcccgtctcccct
ggtgaccgattgattgtgcaggtcagccaggccgatccccaccgagacgaaattcgtttt
cgggagttgtcaattcccgaaacgctctag
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