Synechocystis sp. LKSZ1: OLK001_28220
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Entry
OLK001_28220 CDS
T10519
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syns Synechocystis sp. LKSZ1
Pathway
syns03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OLK001_28220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syns03400
]
OLK001_28220
Enzymes [BR:
syns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OLK001_28220
DNA repair and recombination proteins [BR:
syns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OLK001_28220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BFM40896
LinkDB
All DBs
Position
3159744..3163223
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AA seq
1159 aa
AA seq
DB search
MTLSSVLRHLEKLPLAVELRQKLQKQRSLKLSGIARLPKGLVASSLAQSLQHHLLVVTAT
LEEAGRWAAQLELMGWRTVHFYPTSEASVYESWDAELEMTWGQMQVLMALQQPREGKAIV
TTEKALQRLLPPADCFHRACLNLSKGLSLDSKILDLTLAQLGYERVAATETEGQWSRRGD
IVDVFPVAAELPVRLEWFGDELERLREFDPASQQSLDSVEQLTLTPRAFEVLIEQQLRTQ
GLELEPYFNEDDWGQWQTGQRPEGLLRLLGLAFEQPASLLDYLPPQTLVAFDEPEQCQGH
ADRRWDYAEQDWQALQQPSLPPLHQRFEERVQQVQANFLSLELRELHDSSESDSLDLSSR
PLPTTPHQFAKLAEILRGKREIYTGISLDRYATWLVSAQPSRTVSLLQEHDCPAQFIPNP
KDYPAIEKFQIQKTAVALKYAGIAELEGFILPTFRIVVVTDRELFGQHALATPEYVRKRR
RAASKQVDIHKLSPGDYVVHKSHGIGKFMKLEALATREYLVIQYADGLLRVPADSFDSLS
RYRHTDRTPPQLHKLGSKTWEATKAKVRKAIKKLAVDLLNLYAKRAKQKGFMFPPDTPWQ
LELEDSFPYQATPDQLKAVQDVKRDLESERPMDRLVCGDVGFGKTEVAVRAIFKAVTSGH
KQVALLAPTTVLTQQHYHTLKERFAPYPITVGLLNRFRTLSEKKEILERLASGELDIVVG
TQQILGKSVKFKDLGLLVIDEEQRFGVNQKEKIKSLKTEVDVLTLTATPIPRTLYMSLSG
IREMSLITTPPPSRRPIQTHVSPYNPEVVRTAIRNELDRGGQVFYVVPRIEGIEELAGQL
QQMIPDARLAIGHGQMEESELESTMLAFNNGEADILICTTIIEAGLDIPRVNTIIVEDAQ
KFGLAQLYQLRGRVGRSGIQAHAWLLYPNKRDLTETARQRLRALQEFSQLGSGYQLATRD
MEIRGVGSLLGAEQSGQMEAIGFELYMDMLQEAIREIQGQEIPKVEDAQIDLQITAFIPS
DYMPDLEQKMAAYRRITAVESAQALVKIALEWADRYGPLPNPVEQLFRVVELKHLAKSLG
FSRIKLEGHQNIVLETPMEEPAWKLLSENLPQHLRTRFVYSPKKVIVRGLGVMKPAQQLE
NLVDWFKKMKGALPEAQDG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttcttccgtgctacgtcacctagaaaaattgcccctagcggtggaattgcgc
caaaaattacaaaaacagcgctccctcaagctgagtggcattgcacgtctacccaaaggg
ttggtggcgtcaagtctggcccaatccctccaacatcatctcttagtcgttacagcgacc
ctggaagaagccgggcgttgggccgctcaattggaactaatgggctggcgaacggttcat
ttttatcccacctccgaggcttcagtctatgaaagttgggatgcggaactagagatgacc
tggggccaaatgcaagtcttgatggccctgcaacaaccgagagaaggcaaggctattgtt
actacggaaaaggccctccaacgacttctcccccctgccgattgctttcaccgggcctgc
ctaaatctgagtaagggcctgagcctcgatagcaaaattctcgatttaaccctggcccaa
ttggggtatgaacgagtagcggcgacggaaactgagggccaatggagtcgtcggggggat
attgtggatgtgtttcccgtagcggcagaattacccgtccggttggaatggtttggtgat
gaactggaacggttgcgggaatttgatccagccagtcaacaatccctagactcggtcgaa
cagttgaccttaactccccgtgctttcgaagtcctgattgaacagcagttacgaactcag
ggccttgagcttgaaccttactttaacgaagatgactggggccagtggcagacaggccaa
cgtcctgagggactcctacggttactcggcttggcttttgagcaacccgcttccctgttg
gattatctcccccctcaaaccctggtggcctttgatgaacccgaacaatgccagggccat
gcggaccgccgttgggactacgccgaacaggattggcaggccctgcaacagccctcctta
ccgcccctacaccaacggtttgaagagagggtacagcaggtgcaggctaacttcctgagc
ttagaactcagggaactccacgacagcagtgaatccgatagccttgacctctccagccgt
cctctgccaaccacgccccatcaatttgccaaattagcggaaattttgcggggtaaacgg
gaaatttataccggcattagtcttgaccgctacgccacttggctggtgtcggcccagccc
tcccgcaccgtttctctcctccaggagcatgattgtccggcccaatttattcccaacccc
aaggattacccggccattgaaaaatttcagatccagaaaactgccgtggccctcaaatac
gctggcattgcggagctagaaggcttcattctgcccaccttccgcattgtggtggtgacg
gatcgagaactctttggccagcacgcattagccaccccagaatacgtccgcaagcgtcgt
cgggccgcctccaaacaagtcgatatccacaagctttcccctggggactacgtcgtccac
aaaagtcatggcatcggcaagtttatgaagctagaggccctggctacgcgggaatatctg
gtgattcaatacgccgacggcctgctgcgcgtccccgccgatagttttgatagtttgtcc
cgttaccgccacaccgaccggacaccgccgcaactccacaaactgggcagtaaaacctgg
gaggccaccaaggccaaagtccgcaaggccattaaaaaattggctgttgatctgctcaat
ctctacgccaagcgggctaaacagaagggctttatgttccccccggataccccttggcaa
ctggaactggaggactcctttccctaccaagccacccctgaccaactcaaggccgtccag
gatgtcaagcgagacctcgaaagtgagcgcccaatggatcgtctggtctgtggggatgtg
ggcttcggtaaaactgaagtggctgtccgggccatttttaaggctgtcaccagtggtcat
aagcaagtggccctcctggccccgaccaccgtcctcacccagcaacattaccacaccctc
aaggaacgttttgctccttatcctatcaccgtgggcctgctgaatcgtttccgtaccctg
tccgagaaaaaagagatcctagagcgcctggcttcgggggaactagatattgtggtggga
acccagcaaattttgggtaaatccgtcaaatttaaagacctgggactattggtaattgat
gaagaacaacgctttggggtcaaccaaaaggaaaagatcaaaagcttgaaaacggaagtg
gatgtcctgaccctaacggcgactcctatcccccgcaccctctacatgtccctgtccggc
atccgagaaatgagcctaatcaccacgccgcccccctcccgtcgccccattcaaacccac
gtttctccctacaatcctgaggtggttcgtactgcgattcgtaatgagttagaccggggg
ggccaggttttttacgtagtgccgcggattgaaggcattgaggaactggcgggccaactc
cagcagatgattcccgatgctcgcctagccattggccacggccaaatggaggaatcggaa
ctggaaagcactatgctggcctttaataacggcgaggccgatattttaatttgcaccacg
attattgaagcgggactggatattcctcgggtcaacaccatcattgtggaagatgcccaa
aaatttggtctggcccagctttaccaactgcggggccgggtgggccgctccggcattcag
gcccatgcctggttactctaccccaacaaacgagatttgacagaaacggcccggcaacgg
ttacgggccctgcaggagtttagccaactgggttcgggctatcagttggccacgcgggat
atggaaatccggggcgtagggtctctgctgggggccgaacaatcggggcaaatggaggcc
attggctttgagttgtatatggacatgctccaggaagccatccgcgaaatccagggccaa
gaaattcccaaggtggaagatgcccaaattgatctgcaaattacggcctttattcccagt
gactacatgcccgacctggagcagaaaatggcggcctatcgtcgcattactgccgtggag
tcagcccaggccctggtcaagattgccttagaatgggccgaccgctatggccctctgccc
aaccccgtggaacaactctttcgggtggtggaattaaaacacctggccaaatccctgggc
ttttcacgaattaaactcgaaggccatcaaaacattgttctcgaaacccccatggaagag
ccggcctggaaactcctgtcagagaacttgccccaacatttgcggactcgctttgtctat
agccccaaaaaggtgattgtgcggggtctgggggtcatgaaaccggcccagcagttagaa
aacctcgtggattggttcaaaaaaatgaagggtgcgttacccgaagcccaggatggctaa
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