Synechocystis sp. LKSZ1: OLK001_30170
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Entry
OLK001_30170 CDS
T10519
Symbol
dnaE_2
Name
(GenBank) DNA polymerase III alpha subunit [Contains: Ssp dnaE intein]
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
syns Synechocystis sp. LKSZ1
Pathway
syns03030
DNA replication
syns03430
Mismatch repair
syns03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OLK001_30170 (dnaE_2)
03430 Mismatch repair
OLK001_30170 (dnaE_2)
03440 Homologous recombination
OLK001_30170 (dnaE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syns03032
]
OLK001_30170 (dnaE_2)
03400 DNA repair and recombination proteins [BR:
syns03400
]
OLK001_30170 (dnaE_2)
Enzymes [BR:
syns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OLK001_30170 (dnaE_2)
DNA replication proteins [BR:
syns03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OLK001_30170 (dnaE_2)
DNA repair and recombination proteins [BR:
syns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OLK001_30170 (dnaE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
Intein_splicing
SLBP_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
BFM41091
LinkDB
All DBs
Position
complement(3389594..3392257)
Genome browser
AA seq
887 aa
AA seq
DB search
MSFVGLHIHSDYSLLDGASQLPALVDRAVELGMPAIALTDHGVMYGAIELIKVCRNKGIK
PIIGNEMYVINGDIEVNKRHRRFHQVVLAKNTQGYKNLVKLTTISNLRGIQGKGIFARPC
INKELLTQYHEGLIVTSACLGGEVPQAILAGDLARAREVAKWYKDLFGEDYYLEIQDHGS
VEDRLVNVSLVKIAQELDIKIIATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLRYSG
TEYLKSAEEMRRLFRDHLTEEVIEAAISNTLEVADKVKEYKILGEPRIPNYPVPPGQTPD
TYVEEIAWAGLLERLKCRSREEVSQVYKDRLEYELKMLQTMGFCTYFLVVWDYIKYARDH
GIPVGPGRGSAAGSLVAYCMRITNIDPVHHGLLFERFLNPERKSMPDVDTDFCIDRRDEM
IQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIAYAESDKMAKLIPVSRGKPTKLK
IMISDQTPEPAFKARYDNELWVKHWIDMAIRIEGTNKTFGVHAAGVVISSEPLDEIVPLQ
RNNDGAVITQYYMEDLEALGLLKMDFLGLKNLTTLQRATELVRQNRGVELDLDQLPLEER
KARQIALKRNSKKLPEDIQKTQKLLENGDLEGIFQLESQGMKQIVKDLKPSGIEDISSIL
ALYRPGPLDAGLIPIFINRKHGREAISYQHPLLESILNETYGVLVYQEQIMKMAQDLAGY
SLGEADLLRRAMGKKKASEMQKHREIFIDGSTRNGVPARVAENLFDQMVKFAEYCLAYET
PVLTVEYGPLPIGKIVEQDIQCHVYSVNSQGLVYTQPILQWHQRGLQEVFEYELTDGTYL
RATPEHRFMTQDGSMRTIDEIFEQGLDLYYLPTPTKMPLGVGAGTAG
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgttggtttacacattcacagtgactatagcctcctcgatggggcctcccag
ctaccggctctggtggatcgggcggttgaactggggatgcccgccattgctctgactgac
cacggcgtgatgtacggggccattgagctaatcaaagtctgccgtaataaagggataaag
ccaattattggcaacgaaatgtatgtgatcaacggtgatattgaggtcaacaagcgtcac
cgtcgtttccatcaggtggttttagccaaaaatacccagggttacaaaaatctggtcaaa
cttaccaccatttccaatcttcggggaattcaaggcaaaggcattttcgctcggccctgc
attaacaaagaactcttgacccaataccacgagggtctgatcgtcaccagtgcctgtctt
ggaggagaagtgccccaggcgattctggccggtgatttggcccgggcccgagaagtagct
aaatggtataaagatttatttggtgaggattactacctagagatccaagaccatggctcc
gtggaagaccgcctcgtgaacgtgagtttggtcaaaattgcccaggagctggacattaaa
attattgctaccaatgattcccacttcatttcctgtaacgatgtcgaggcccacgatgcc
ctcctttgtatccagacgggaaaattaattacggaagaaaaacgcctccgctacagtggc
acggaatatcttaaatctgctgaggaaatgcggcgcctgtttcgagatcatttaacagag
gaggttattgaagcggctatcagcaacacgttagaagtagctgataaggtcaaggagtat
aaaatcctgggggaaccccgcattcccaactatcctgttccccctggccagacccccgat
acctacgtggaagaaattgcttgggccggtttattagagcgattgaagtgccgttcccgc
gaagaggtcagccaggtttataaagaccgcttggagtatgaattaaaaatgctccaaaca
atgggattttgtacctattttctagtggtttgggactacattaaatacgcccgagatcat
ggtattcccgtggggccaggccggggctctgccgccggttccttggtggcctattgcatg
cgcattaccaatattgatccagttcaccatggtctattgtttgagcgctttcttaatcca
gaacggaagtcaatgcctgacgttgatacagatttttgcattgaccgccgggatgaaatg
atccagtacgtgacggaaaagtatggcgaggccaacgtggctcaaattattacctttaat
cgcatgacctccaaggcagttctgaaggatgtggcccgagtcttggatattgcctacgcc
gaatcggacaaaatggcaaagttgattccggtgtcgcgggggaaaccaaccaagttaaag
atcatgatctccgatcaaaccccagaaccggcctttaaggcccgctacgataatgaactt
tgggttaaacattggatcgatatggcgatacgcattgaaggcaccaacaaaacctttggt
gtccatgcggcgggagtggtcatttcctcggaacccttggatgaaattgttccccttcaa
cgtaacaatgatggagcagtgattacccagtactacatggaagatttggaggccctgggc
ctcttaaaaatggactttctgggtctgaaaaacctcacaacgttacaacgagccacggaa
ttagtccgacaaaatcggggcgttgagttggatctagaccaactacccttagaggaacgc
aaggcccggcagattgccctaaaacgcaacagcaaaaagctgccggaggatatccagaaa
acccaaaaactgttagaaaatggtgatctagaagggatttttcaattggaatcccagggg
atgaagcaaattgttaaagacctcaaaccgtcggggattgaagatatttcttcgattctg
gccctgtaccgtccagggcctttggatgcgggtctgattccgattttcattaatcgtaaa
catggccgtgaagccatttcctatcagcatcccttgctagaaagtattttgaatgaaact
tatggggtactggtttatcaagagcaaatcatgaaaatggcccaggacttggcgggctat
tccctgggggaagcagatcttctccgccgggccatgggtaagaaaaaggcctcggaaatg
cagaaacaccgggaaattttcatcgatggttcgacccgcaatggcgtaccggctcgggtg
gcggaaaatctctttgaccagatggttaagtttgccgaatattgcctagcctacgagact
cccgtcttaactgtcgagtatggccctttgcccatcggtaaaattgtggagcaagacatc
cagtgtcacgtctatagcgttaattcccaaggcctggtttatactcagcccattctccaa
tggcatcagcggggtctccaggaagtatttgagtatgaattaaccgatggcacctatctg
cgggctaccccggagcatcgctttatgactcaggatggctctatgaggacgattgatgaa
atttttgagcaaggccttgatctctactatctccctaccccgactaagatgcctctgggg
gttggtgctgggactgctggttag
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