Synechocystis sp. LKSZ1: OLK001_32200
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Entry
OLK001_32200 CDS
T10519
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
syns Synechocystis sp. LKSZ1
Pathway
syns03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
syns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OLK001_32200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syns03400
]
OLK001_32200
Enzymes [BR:
syns01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
OLK001_32200
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
OLK001_32200
DNA repair and recombination proteins [BR:
syns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OLK001_32200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
zf-dskA_traR
Motif
Other DBs
NCBI-ProteinID:
BFM41294
LinkDB
All DBs
Position
3602538..3603386
Genome browser
AA seq
282 aa
AA seq
DB search
MPELPEVETVCRGLNRLTLGQILQGGEVLHPSTLAYPLSVAAFQQALTGLQFQAWQRRGK
YLLGQLINPKGQSASVLGIHLRMTGQLLWVNQAEMRTPHTRLCFPCQSGQELRFIDIRTF
GRIWYVLPGESIESVITGLKRLGPEPFSPDFSPAYLQSRLGRSQRPLKTALLDQGLVAGL
GNIYADEVLFQSGILPTRTGSQLQAKYWPLLHQTILQVLETAIAAGGTTFSNFLDPTGIN
GNYGGQAWVYGRKGETCRVCDTPIERIKLAGRSSHFCPTCQR
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaactgccagaagtagaaacagtttgtcggggtcttaatcgtctgacccttgga
caaatcctccaggggggagaagtgttgcatccaagcacgctcgcttaccccctttctgtt
gccgcctttcaacaggccctaaccggactacagttccaggcctggcagaggcggggcaaa
tatttacttggccaattaatcaacccaaaaggtcaatcagccagtgtcctcgggattcat
ctccgtatgacgggccaattgctctgggtgaaccaagcagaaatgcggactccccacact
cgcctttgctttccctgtcaatcgggccaagaactccgttttattgatattcgtactttt
ggtcgaatctggtacgtcctaccgggcgaatcgatcgagagtgtgataacgggtctgaag
cgcctcggcccggagcctttttccccagactttagcccagcctatctccaatcacgcctg
gggcgtagtcaacgacctctgaaaacggccctactcgaccaaggcctggtggctggcctg
ggtaatatctatgccgatgaagtgttattccaatcgggtattttaccgacccgaacaggc
tcccaattacaggccaaatactggccccttctccaccaaacgattttgcaagtgctagaa
acggccattgccgctgggggaaccacctttagcaactttttggatccgaccggaattaac
ggtaactatggcggtcaggcctgggtctatgggcgcaaaggagagacctgtcgagtctgt
gacacccccattgaacggattaaactggcgggccgttccagtcacttttgcccgacttgt
cagcgctag
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