Synechococcus sp. WH 8101: SynWH8101_0212
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Entry
SynWH8101_0212 CDS
T10836
Name
(GenBank) ATPase AAA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
synu Synechococcus sp. WH 8101
Pathway
synu03420
Nucleotide excision repair
synu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
synu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SynWH8101_0212
03430 Mismatch repair
SynWH8101_0212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synu03400
]
SynWH8101_0212
Enzymes [BR:
synu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SynWH8101_0212
DNA repair and recombination proteins [BR:
synu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SynWH8101_0212
MMR (mismatch excision repair)
Other MMR factors
SynWH8101_0212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
DEAD
NPHP3_N
AAA_11
ResIII
DUF4158
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QBE67824
LinkDB
All DBs
Position
216717..219128
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AA seq
803 aa
AA seq
DB search
MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT
NKAAREMKERLELLLAQRLAQSQFGQPWSTLPPVEQRQLRSRIYREVTKELWIGTFHALF
ARMLRFDIDKFKDAEGLSWTKQFSIYDETDAQSLVKEIVTQELQLDPKRFDPKKTRWAIS
NAKNQGWLPDDLEANAEGQRGKLTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNEQV
RAYWHRRFRHVLVDEYQDTNRTQYELIKLLVTDGVDPQAYDNWSGRSVFVVGDADQSIYS
FRAADFTILMGFQDDFGDKAPDDSTRTMVKLEENYRSTATILEAANALIAHNSERIDKVL
RPTRGEGELIALTRCDDEIAEAEAVVHRLRMMEAANPELGWGDMAVLYRTNAQSRAIEES
LVRWRIPYVVVGGLRFYDRREIKDLLAYLRLLVNPADTVSLLRVINVPRRGIGKTTIQRL
TDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLLQFCELINSLQARVQEAAPSELIQTVME
QSGYVSELIAEATDEAEERRRNLQELVNAALQYQEENDEGDLEGFLASAALASDADSKDT
AADRVTLMTLHSSKGLEFPVVCLVGLEQGLFPSYRSLDDPASLEEERRLCYVGITRAKER
LFLSHASERRLWGGMREAAVPSVFLSELPEALVQGDIPRSGGAALRREQRLERLTRVDRP
DARQVAAGGAASAPANAVRRRQAGPAPGKSWSVGDRVLHASFGEGEITHTFGSGEKVSIA
VKFAGMGPKILDPRLAPIQPLGG
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgagctttctggccggcctgaacgacgcccaacggcgggcggtggatcaccacgagggg
ccgctgctggtggtggctggggccggcagtggcaagacccgggcactcacccaccggatt
gcccatctgatcggcgagcacggcgctgatccggcccagattctggcggtgaccttcacc
aacaaggcggcgcgggagatgaaggagcggctggagctgctgctggcgcagcggttggcc
cagagccagttcggccagccctggagcacattgccgccggtggagcagcgacagctgcgc
tcacgcatttatcgggaggtgaccaaggagctgtggattggcaccttccacgcccttttc
gcgcgcatgctccgcttcgacatcgacaagttcaaggatgcggaaggcctgagctggacg
aagcagttctcgatctacgacgagaccgacgcccagagcctggtgaaggagatcgtcacc
caggagctgcagctcgacccgaagcgtttcgatcccaagaagacacgctgggcgatcagc
aacgccaagaaccagggctggctgccggatgacctggaggcgaatgcagaagggcagcgg
ggcaagctcaccgccgatgtgtatcggcgctatcgcaaggccctggcggccaacaatgcc
ctcgatttcgatgatctgctgctgctgcccgtgcagttgctgcagcagaacgagcaggtg
cgcgcctactggcaccgccgcttccggcatgtgctggtggatgagtatcaagacaccaac
cgcacccaatacgagctgatcaagctgctcgtgactgatggtgtggatccccaggcctac
gacaactggagcggccgctcggtgtttgtggtgggtgatgccgaccagagcatctacagc
ttccgggctgctgatttcacgatcctgatgggctttcaggacgatttcggcgataaggct
cccgacgacagcacccgcacgatggtgaagctggaggagaactaccgctccaccgccacg
atcctggaggcggccaatgccctgatcgcccataacagcgagcggatcgacaaggtgctg
cggcccacccgcggcgaaggggagctgatcgcgctcactcgctgcgacgacgagatcgcc
gaagccgaagcggtggtgcaccggctgcggatgatggaggcggccaacccggagctgggc
tggggggatatggcggtgctatatcgcaccaatgcccagtcgcgggcgatcgaggaatcg
ctggtgcgctggcgcatcccctatgtggtggtggggggcctgcgcttttacgaccggcga
gagatcaaggatctgctcgcctatctgcgcctgttggtgaacccggccgacaccgtcagc
ctgctgcgggtgatcaacgtgccgcggcgcggtattggcaaaaccacgattcagcggctc
accgatgcggccaatcagctgggcattccgctctgggatgtggtgagcgatccggaggcg
gtgcgctccctcggtggccgttccgccaaggggctgctgcagttctgcgaactgatcaac
agcctccaggcccgggttcaggaggcggccccctcggagctgatccagacggtgatggag
cagagcggctacgtgagtgagctgatcgctgaggccaccgatgaggcggaggagcggcgc
cgcaacctgcaggagctggtgaatgcggcgctgcaataccaggaggagaacgacgagggc
gatctggaaggcttcctggcctccgccgccctggccagtgatgccgacagcaaggacacc
gccgccgatcgcgtcaccctgatgaccctgcacagcagtaaagggctggaatttccggtg
gtgtgtctggtggggctggagcaggggttgttccccagttaccgctcgctggatgatcca
gcgtcgctggaggaggagcggcggctctgctatgtgggcatcacccgcgccaaggagcga
ctgttcctctcccatgcgagtgagcggcggctctggggtggcatgcgcgaggcggcggtg
ccgagtgtgtttctctccgagctgccggaggccctggtgcagggcgacatcccccgcagc
ggaggcgcggcgctgcggcgcgagcagcggctggagcgactcacccgggtggatcggccc
gacgctcgccaggtcgctgcagggggggcggccagtgcgccagcgaatgcggtgcggcga
cgccaggcggggccggcaccgggcaagagctggagcgtgggcgatcgggtgctgcacgcc
agcttcggggaaggggagatcacccacaccttcggcagcggtgagaaggtgtcgatcgcg
gtgaaattcgctggcatgggcccgaagatcctcgatccgcgcctggcgccgattcagccg
ctggggggctga
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