Synechococcus sp. WH 8101: SynWH8101_0408
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Entry
SynWH8101_0408 CDS
T10836
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
synu Synechococcus sp. WH 8101
Pathway
synu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SynWH8101_0408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synu03019
]
SynWH8101_0408
03009 Ribosome biogenesis [BR:
synu03009
]
SynWH8101_0408
Enzymes [BR:
synu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SynWH8101_0408
Messenger RNA biogenesis [BR:
synu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SynWH8101_0408
Ribosome biogenesis [BR:
synu03009
]
Prokaryotic type
rRNA processing factors
SynWH8101_0408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
TusA
Motif
Other DBs
NCBI-ProteinID:
QBE68017
LinkDB
All DBs
Position
431631..433628
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AA seq
665 aa
AA seq
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MPQQIVIAEQLRIAAVLTDERVDELIVAQGRYQIGDVYLGTVENVLPGIDAAFVNIGESE
KNGFIHVTDLGPLRLKKGAAGITELLEPRQRVLVQVMKEPTGTKGPRLTGNLALPGRYLV
LQPSGQGVNISRRISAEGERNRLRALGVLVKPPGAGLLIRTEAEGISEELLIDDLEALLR
QWEAIQRAAETATPPVLLNRDEDFIHRILRDHTGPELVRVVVDDSAAVERVSSFLGEEGA
NVLVESHPEPGELLEHYKVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRS
ANARETVLWTNCEAAVEIARQLKLRNIGGVIIVDFIDMDSRRDQLQLLEYFTAAIRDDSA
RPQIAQLTELGLVELTRKRQGQNIYELFGRACPSCGGLGHVAVLPGKDLLQPLATATGLV
RSAASARAEVAPPAEAGSGRRRRGGRGRGGSATAADDAISTVSADSSSAEVDVSDAVATQ
ELPSRRQDPELVAVPMTDQQEEVYGWLGLNPALLLDEPPESDNLMVRVVRPGADPEAVLE
EARQHLAAAGSRRRRRGSRGGSRSNGRGTGANGDASAADRAGGERDAAPLMVEITPLEIT
PFDTNPLEPAPQALEPQALEPQTPAPQMPEPASTMASPAISVDEGVDPDQEPRRRRRRSS
AATAD
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcagatagtcatcgccgagcagctgcggatcgccgcagtgctcaccgatgag
cgtgttgatgaactgatcgttgcccagggccgataccagatcggtgacgtgtatctcggc
accgttgaaaatgttctgcctggaatcgacgctgctttcgtcaacatcggtgaaagtgag
aagaatggatttattcatgtcaccgatctcggcccccttcgtctgaagaaaggagcggcc
ggcatcaccgaattgctcgagccccgtcagcgggtgttggtgcaggtgatgaaggagccc
accggcaccaaggggccgaggctcaccggcaacctggccttgcccggtcgctatctggtg
cttcagcccagtggtcagggcgtgaacatctctcgccgcatcagtgccgaaggagagcgc
aatcgtttgcgggccctcggtgtgttggtgaagccacccggtgcgggcttgctgatccgc
acggaagcggaggggatcagcgaggagctgttgatcgatgacctcgaggccctgttgcgg
caatgggaggcgatccagcgggctgcagaaacggccacccctccggtgctcctcaaccgt
gatgaagacttcatccatcgcatcctgcgcgatcacaccggccctgagctggtgcgcgtt
gtggtggatgactccgctgcggtggagcgggtgagcagcttcctgggtgaggagggcgcc
aatgtgctggtggagtcccacccggagccgggcgaacttctcgagcattacaaggtcaat
gcggccatccgggatgccctcaagccccgcgtcgaccttccctccggcggctacgtgatc
atcgagcccaccgaggcgctcacggtgatcgatgtcaattccggctcgttcacccgttcg
gccaatgcgcgcgaaacggtgttgtggaccaactgtgaggcggcagtggagatcgcccga
cagctgaaattgcgcaacattggtggcgtgatcattgtcgatttcatcgacatggattcg
cgccgtgatcagctccaattgctggagtacttcaccgccgcgattcgcgacgacagtgcc
cggcctcagatcgcccagctcacggagctcggtctcgtggagctgacccgtaaacgccag
ggccagaacatctacgagctgtttggacgggcctgccccagctgcggaggtctgggccat
gtggcggtgctgcccggcaaggatctgctgcaaccgttggccacggcaacgggcctggtg
cgctcggctgcgtcggcccgggcggaggtggcgcctcctgcggaggctggatccggccgt
cgccgtcgcggcgggcgggggcgtggcggttctgctaccgccgctgacgatgccatcagc
accgtcagtgccgactccagttcggccgaggtggatgtgtcggatgccgtagccacccag
gagctgccatcccgccgccaggatcctgagttggtggctgtgccgatgacggatcagcag
gaggaggtgtatggctggttgggcctcaatcctgcgctgctcttggatgagccgcccgag
agtgacaaccttatggtgcgggtcgttcgtcccggtgccgatccggaggcggtgttggag
gaggcacgccagcacttggctgctgcgggcagtcggcggcggcggcgtggcagtcggggc
ggcagccggagcaacggtcgcggtactggcgcgaacggtgacgcaagcgctgccgatcgc
gccggtggggagcgcgacgctgcccctctgatggtggagatcacgccgctggagatcacc
ccgttcgacaccaaccctcttgagcctgcaccgcaggcgcttgaaccgcaggcgcttgaa
cctcagacgcctgcacctcagatgcctgaacccgccagcaccatggcctctcctgccatc
agcgtcgacgagggcgtcgatccggatcaggagcctcgccgccgccgtcgccgctcctcg
gcggccacggcggattga
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