Synechococcus sp. WH 8101: SynWH8101_1118
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Entry
SynWH8101_1118 CDS
T10836
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
synu Synechococcus sp. WH 8101
Pathway
synu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SynWH8101_1118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synu03019
]
SynWH8101_1118
03016 Transfer RNA biogenesis [BR:
synu03016
]
SynWH8101_1118
Enzymes [BR:
synu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SynWH8101_1118
Messenger RNA biogenesis [BR:
synu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SynWH8101_1118
Transfer RNA biogenesis [BR:
synu03016
]
Prokaryotic type
tRNA degradation factors
SynWH8101_1118
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1_RRP5
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QBE68706
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All DBs
Position
1064814..1067069
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AA seq
751 aa
AA seq
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MKFTVADLLDQLPAEGSIDTGTLEKIFRLSNRSEKDSLQLAITGLEKIGVISRDGDAAVQ
RSEDEGLIEARLRCSSKGFCFAIREDGGEDIYIRDHQLNHAWNGDRVLVRITREGGRRRS
PEGGVQCILERQTTSLLAHLDQQDDRWVALPLDDRLLATIEVPEGTEETSALVEVKVDRY
PVAQFPARGHVARPLPLDAGPAGDRDLLLTKANLHERPDPPRSSLKAPNAKKRHDLTAQP
ALLLRSWRAELAPDLPAVHVEPHDGGTRLWIHSPTLAERLSPGNALDLWLRDQAEAICLG
DVWQPLLTKALIDASRFAVGEAQDAISVRLDCSADGELRDWSFCLSRIQPVACVDAEALQ
ALAARKPKARTVPAVLKPIKDQIGQLETLLFCARSLQADALRRGGIELDLPAPELESLGD
LRDAWPDPGRHGWLPPFNPEDPQAILSLLLEAAARAWALHRQDLKLPALELRAPEADASS
LTDVAKTAVALELPLELDDEGSPAASELAEVFRDSPFRRVLDQQLRQALPDPLFTLARSE
EAEQGQEAKAVEAALAPWCCPSLQVADLINQQVITSLLLDGKDRPTVRHKDKVPLGDRGV
GSRIDWPLFTQSLTQKVHDWFSDRLVQRLNARRRQVTDLQRDVVAMMQARSCEALVGQEH
SGVISGVQSYGFFVEIPPSMVEGLVHVSSLNDDWYEYRSRQNRLVGRRHRRRFQLGDTVT
VRIIKVDVLRNQIDLEVVPESLQPLPDDAAS
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacggtcgctgacctgctcgaccagctcccagccgaggggtccatcgacacc
ggcaccctggagaagatctttcgcctgagcaaccgctctgagaaagacagtctccaactc
gccatcaccggcctggaaaagattggcgtgatcagccgcgacggcgacgctgccgtgcag
cgttcggaggatgaggggttgatcgaggcacgtctgcgctgcagcagcaaaggcttctgc
tttgccattcgcgaagacggtggcgaagacatttacatccgtgatcaccagctcaaccac
gcctggaatggcgaccgggtgctggtgcggatcacacgggagggcgggcgacgtcgctca
ccggagggtggggtgcagtgcatcctcgagcgccagaccacgagcctcttggcccatctc
gatcagcaggacgatcgctgggtggcgctccccctcgacgatcgcctgctcgccacgatc
gaagtgccagagggcacagaggagacctcggcgctggtggaggtcaaggtcgaccgctac
cccgtggcccagttccccgcccgcggccatgtcgcgcgccccttgcctctcgatgccggc
cccgccggtgatcgcgatctgctgctcaccaaggcgaatctgcatgagcggcccgatccg
ccgcgcagcagcctcaaggcccccaatgccaagaagcgccacgacctcaccgcccaaccg
gcgttgctgttgcgcagttggcgtgccgaactggcaccggatctccccgccgtgcacgtg
gaaccccatgacggcgggacccggctctggatccacagtcccaccctcgcggaacgactc
agcccggggaatgccctggatctctggctgcgcgatcaggctgaagcgatctgcctgggc
gatgtgtggcagcccctgctcaccaaggcgctgatcgacgcttcccgctttgcggtggga
gaagctcaggatgcgatcagcgtgcggctcgattgctccgctgatggtgagctgcgcgat
tggtcgttctgcctcagccgcatccaacccgttgcctgcgtcgatgccgaggcgcttcag
gccctggccgctcgcaagcccaaggcgcgcacggtgcccgccgtgctcaagccgatcaaa
gatcagatcggtcagctggagacgctgctcttctgtgcccgttcgctgcaggcggatgcc
ttacgccgtggtggcatcgagctggatctgcccgcccccgagctcgagagccttggggat
ctgcgcgacgcctggcccgaccccggtcgccatggctggctgccccccttcaatccggag
gatccccaggcgattctctccctgctgctggaggccgccgcacgggcttgggccctgcat
cgccaggacctgaagctgcctgcattagagctgcgggcccccgaggccgatgcctcaagt
ctcaccgatgtggccaaaaccgccgtcgccctagagctacctctggagctggatgacgag
ggcagccccgcagcctcggagctggcggaggttttccgcgacagccccttccggcgggtg
ctggatcagcagttgcgccaggccctccccgatccgctgttcacgctcgcccgcagcgag
gaggccgagcagggccaggaggccaaggcggtggaggcggccctcgcgccctggtgttgc
cccagcctgcaggtggccgatctgatcaaccagcaggtgatcaccagccttcttctcgat
ggcaaggatcgccccaccgtgcgtcacaaagacaaggtgcccctgggggatcgtggcgtc
ggcagtcgcatagactggcccttgttcacccagagcctgacccagaaggtgcacgactgg
ttcagtgatcggctggtgcagcggctgaatgcgcgtcgtcgtcaggtgacggatctgcag
cgggacgtggtggcgatgatgcaggcccgcagttgcgaagccctggtggggcaggagcac
agcggcgtcatcagcggtgtgcagagctacggctttttcgtggagattccgccgtcgatg
gtggaggggctcgtgcacgtgagctctctcaacgacgattggtacgagtaccgctcacgt
cagaaccgcctggtcggtcgccgccatcggcgtcgcttccaactgggcgacacggtgacg
gtgcggatcatcaaagttgatgtgctgcgcaaccagattgatctggaggtggtgcccgaa
tccctgcagccgctcccggatgacgccgcttcctga
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