Synechococcus sp. WH 8101: SynWH8101_1443
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Entry
SynWH8101_1443 CDS
T10836
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
synu Synechococcus sp. WH 8101
Brite
KEGG Orthology (KO) [BR:
synu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
synu03016
]
SynWH8101_1443
Enzymes [BR:
synu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SynWH8101_1443
Transfer RNA biogenesis [BR:
synu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SynWH8101_1443
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
DUF629
Motif
Other DBs
NCBI-ProteinID:
QBE69027
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Position
complement(1322901..1324811)
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AA seq
636 aa
AA seq
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MLPARQIDPIHPLPSGVDAPARLGVFPWSFSPEQLTEASPKRRDWGQAWVLLVDTGETLD
LAGFASLVGAADSAVARAAVWLALQAGQDLFRLRQGVVEPRSLTDVRQRRRERYQQVLRD
RQEQRWLTLLRQPQPVEAAGLDAWTQAALRQMQQVAASQLDLVDCDPLVRSALKQLHLDD
DRGSLRHWLVDLGQWDPHHLVSMGGTTWSQGFSAELIAEAERLLVLHDHTLPGDEERLDC
TQQRCVTIDDDDTRDIDDGLALERRPDGRQRIWIHVADPGRLVAAESPLDLEARRRGSSL
YLARGILPMFPESLSTGPFSLRAGQRNPAWSTWVELDDSGAIETYGIARSWVAPRYRLSY
EDADELIDFAPPEEADLTELNDLLERRRQWRVSQGALLMDLPEGRIRCREDDRPSVAITE
PSPSRLMVAEAMILAGAVAARFGMEQGLALPFRSQLPADLPSPAQLDELPDGAVRFAAIK
RCLSRGLMGTTAAPHFSLGLPAYAQATSPIRRYGDLVVQRQIQAQLSGATPLSDDALQEL
VNSFDGAVREGIAISREDQRHWQQVWFEAHSKEQWQADFLRWLRPQDRLGLVRIEALAID
LAAECPQNAQPGEALLLRVQQVDSLRDQLKLVASAS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
gtgcttcctgcgcgccagatcgatcccattcaccccctgccgtccggtgtggatgcaccg
gcccggttgggggtctttccatggtcgttcagccctgagcagctcacagaagccagtccc
aagcgtcgcgactggggccaggcctgggtcttgctggtcgacacgggtgagacgcttgat
ctcgctggctttgcttccctggtgggcgccgccgattcggccgtggcccgtgctgccgtg
tggctggctctgcaggctggtcaggatctgtttcggcttcgccagggggtggtggaaccc
cgcagcctcaccgatgtgcgtcaacggcgtcgcgagcgctatcaacaggtgttgcgtgat
cgccaggagcagcgctggttgacgctattgcgtcaaccccagcctgtggaagcggctggc
ctcgatgcctggacgcaagccgctctgcgccagatgcaacaggtggccgcgtcccagttg
gatctcgtcgactgcgaccccctggtgcgcagcgcactgaaacagctccacctcgatgac
gaccgcggcagcctgcgccattggcttgtggacctggggcagtgggatccccatcacctg
gtgtcgatgggcggcaccacctggagccagggtttcagcgctgagctgatcgctgaggcg
gagcgattgctggttttgcacgatcacaccctgcccggggatgaggagaggctcgactgc
acccagcagcgctgcgtcacaatcgacgatgacgacacccgcgatatcgacgacggcctg
gccctggagcgcaggcccgacggcagacaacggatctggatccatgtggccgatccgggg
cgtttggtggcagcggagtctcccctggatctggaggcacgacgtcggggtagcagcttg
tatctggcgcggggcatcctgccgatgttcccggaatcactctccaccggccccttcagc
ctccgggccggacagcgcaatcccgcctggagcacctgggtggagctggacgacagcggt
gccatcgagacctatggcattgcgcgcagctgggtggcgccccgctatcggctcagttac
gaggacgccgatgaattgatcgattttgctccgccggaagaggcggacctgacggagctg
aacgacttgctggagcgccgccgccaatggcgcgtcagccagggtgcgctgttgatggac
ctcccggaagggcggatccgctgccgtgaggatgatcgtccaagcgtggcgatcaccgag
cccagcccctcgcgcttgatggtggccgaggcaatgatcctggccggggcggtggcggcc
cgtttcggtatggagcagggcctggccttgcccttccgcagtcagttgccggcggatctg
ccttctcctgctcagttggatgagcttcctgacggggcggtgcgctttgcggcgatcaag
cgctgcctcagccgcgggctgatgggcacgactgcagcgccccatttcagcctcggcctg
ccggcctacgcccaggccacttcgccgatccgccgttatggcgatctggtggtgcaacgc
cagatccaggcgcagctcagcggcgccactcccttgagcgacgacgctctgcaggagctc
gttaacagtttcgatggcgccgtgcgcgaaggcatcgcgatctccagagaagatcagcgc
cactggcaacaggtttggtttgaagcgcacagcaaggaacagtggcaagccgatttcctg
cgctggctccgcccccaggatcgtctcggcctggtgcgcatcgaggcgctggccattgac
ctggcggccgaatgtccccagaacgcccagcccggcgaagcgctgctcctgcgggtgcaa
caagtggattcgttgcgcgatcagctgaagctggtggcttcagccagttga
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