Synechococcus sp. WH 8101: SynWH8101_2401
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Entry
SynWH8101_2401 CDS
T10836
Name
(GenBank) DNA-directed RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
synu Synechococcus sp. WH 8101
Pathway
synu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
synu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SynWH8101_2401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synu03021
]
SynWH8101_2401
03400 DNA repair and recombination proteins [BR:
synu03400
]
SynWH8101_2401
Enzymes [BR:
synu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SynWH8101_2401
Transcription machinery [BR:
synu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SynWH8101_2401
DNA repair and recombination proteins [BR:
synu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SynWH8101_2401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
DUF7337
Motif
Other DBs
NCBI-ProteinID:
QBE69976
LinkDB
All DBs
Position
complement(2176940..2178844)
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AA seq
634 aa
AA seq
DB search
MTNSNLRTENHFDYVKITLASPDRVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWY
LKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGDHKDLKYKQLLTEDEWLEIEDEIYAE
DSEIENEPVVGIGAEALKQLLEDLELESVAEQLREEIAGSKGQKRAKLIKRLRVIDNFIA
TNARPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQRADDEVM
QVLQEVIDGHPILLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVH
VPLAIEAQTEARMLMLASNNILSPATGDPIITPSQDMVLGAYYLTALQPDQQPVAFGDRS
RTFAGLEDVIHAFEDKRIGLHDWVWVRFNGQVEDDEERDEPIQSETLSDGTRFEQWSFRR
DRFDEDGALISRYILTTVGRVVMNHTIIDAVAAT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacagcaacctccgcaccgagaaccacttcgactacgtcaagatcacgctcgca
tcgcccgatcgggtgatggagtggggtcagcgcaccttgcctaatggacaggtggtgggt
gaggtcaccaagcctgaaaccatcaactaccgcacgctgaagcccgagatggacgggctg
ttttgcgaaaagattttcggaccgtccaaagactgggagtgccactgcggtaagtacaag
cgggtgcgccaccgcggcatcgtttgtgagcgctgcggcgtggaggtgaccgagagccgg
gtgcgtcgtcaccgcatgggcttcatcaaactggctgctccggtgtcccacgtttggtac
ctgaaggggatcccgagctatgtggcaatccttctcgacatgcccctgcgggatgtggag
cagattgtctacttcaactgctatgtggtgctcgatccgggcgatcacaaggatctcaaa
tacaagcagctgctcacggaagacgagtggctggagatcgaagatgagatctacgccgag
gattctgagattgagaacgagcccgtcgtgggcatcggcgccgaggctctcaagcagctg
ctcgaagacctggagcttgagtcagttgctgagcagctgcgcgaggagattgccggtagc
aaggggcagaagcgtgccaagttgatcaaacgcctacgggtgatcgacaacttcatcgcc
accaatgcccgcccggaatggatggtgctggatgttattccggtgattccgcccgatttg
cgcccgatggtgcagctggatggcggccgtttcgccacttccgatctcaacgacctttat
cgtcgtgtgatcaaccgcaacaaccgcctcgcgcgtctgcaggagattcttgctcctgag
atcatcgttcgcaacgaaaagcggatgttgcaggaagctgttgatgccctgatcgataac
gggcgtcgggggcgcaccgttgttggtgccaacaatcgcccactgaaatctctcagcgac
atcattgagggcaagcaggggcgcttccgtcagaaccttctcggcaaacgggtcgactac
tccggtcgctctgtgattgtggtgggtccgaagttgaagatgcatcagtgcggtcttccc
aaggaaatggccatcgagctgttccagccattcgtgattcatcgcctgatccgccagaac
atcgtcaacaacatcaaagcggcgaaaaagttgattcagcgcgccgatgatgaggtgatg
caggtgctgcaagaggtgattgatggccatccaatcctgctcaaccgtgcaccgacgctt
caccgtctggggattcaggcctttgaacccaagttggttgatgggcgagccattcagctc
caccccctcgtctgccctgcgttcaacgccgacttcgacggtgaccagatggccgtgcat
gttcccttggcgatcgaggctcagaccgaagcgcgcatgctcatgcttgccagcaacaac
attctctctccggccaccggtgacccgatcatcacgccgtcgcaggacatggtgcttggt
gcctactacctcacagcgctacaacccgatcagcaacccgttgctttcggcgatcgctcc
cgcaccttcgctggtcttgaagatgtgatccatgcctttgaagataagcgcattggtttg
cacgactgggtctgggtccgcttcaacggtcaagtggaagacgatgaagagcgtgatgag
cccatccagagtgaaactcttagcgatggcacccgctttgaacagtggagcttccgtcgc
gatcgatttgacgaagacggtgccttgatcagtcgctacatccttacaaccgttggtcgt
gtggtgatgaatcacacaatcattgacgcggtggcggccacctga
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