Synechococcus sp. WH 8103: SynWH8103_00107
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Entry
SynWH8103_00107 CDS
T04859
Symbol
rpoD8
Name
(GenBank) RNA polymerase sigma factor, type II
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
synw
Synechococcus sp. WH 8103
Brite
KEGG Orthology (KO) [BR:
synw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synw03021
]
SynWH8103_00107 (rpoD8)
Transcription machinery [BR:
synw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SynWH8103_00107 (rpoD8)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r4
Sigma70_r4_2
HNH_repeat
PglZ
LepB_N
Motif
Other DBs
NCBI-ProteinID:
CRY90862
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Position
102413..103411
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AA seq
332 aa
AA seq
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MAPAAATASKPATSARSVSVDVDLVRSYLRDIGRVPLLTHEQEITLGRQVQDLMDIEAMQ
TELESRDGDKPSPDKLAKASGLTPLQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRN
MELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITE
MLNKLKKGQRELSQELGRTPTITELAQYVELPEDDVKDLMCRARQPVSLEMKVGDGDDTE
LLELLAGDADLPSDQVEEDCMKGDLRSLLGQLPHLQEQVLRMRYGMDGEDPMSITGIGRI
LGMSRDRVRNLERDGLAGLRRISDQVEAYVAS
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgccgctgccactgcttcaaaacctgcgacctctgcccgcagcgtcagtgtc
gatgttgatctggtccgttcctacctgcgtgacatcggcagggtccccctgctcacccac
gagcaggaaatcaccctcggacgccaggttcaggatttgatggacatcgaggcaatgcag
accgagttggaaagccgcgatggtgataagccttcacccgacaagctcgccaaggcgtca
ggcctcacaccacttcagctgaagcgcaagctgcagcatgggcgacgtgccaaggagcgc
atggtggctgccaacctgcggctggtggtgagtgtcgccaagaagtacaccaagcggaac
atggaactgctggatctgattcaggagggcacgatcggtttggtgcgtggtgtggagaaa
tttgatcccacccgtggttacaagttttccacctacgcctactggtggatccggcagggc
atcacccgggcgatcgctgagaagagtcgtaccatccgcttgccgattcacatcacggag
atgttgaacaagctcaagaaaggtcagcgcgagctgagccaggagcttggccggaccccc
accatcacagagttggcgcagtatgtcgaactccccgaggatgatgttaaggatctgatg
tgccgtgcacgccagcctgtgagccttgagatgaaggtgggtgatggcgatgacaccgag
ctgctcgaactgctggccggtgacgctgatcttcccagcgaccaagtggaagaagactgc
atgaagggcgatctgcgcagccttttgggtcagcttccccatctgcaggagcaagtgctg
cggatgcgctacggcatggatggcgaagaccccatgagcatcaccggcatcggccgcatt
cttggcatgagtcgagaccgagttcgcaatctggagcgtgatggtttagctggactccgt
cgaatcagtgatcaggttgaggcctacgtcgcgagctga
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