Synechococcus sp. WH 8103: SynWH8103_00709
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Entry
SynWH8103_00709 CDS
T04859
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
synw
Synechococcus sp. WH 8103
Pathway
synw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
synw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SynWH8103_00709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synw03021
]
SynWH8103_00709
03400 DNA repair and recombination proteins [BR:
synw03400
]
SynWH8103_00709
Enzymes [BR:
synw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SynWH8103_00709
Transcription machinery [BR:
synw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SynWH8103_00709
DNA repair and recombination proteins [BR:
synw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SynWH8103_00709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
CRY91448
LinkDB
All DBs
Position
606101..610195
Genome browser
AA seq
1364 aa
AA seq
DB search
MTSSSSKSNKSRKSSKAAKDTTPVHESASRPLSKTPPPFRNHIVDKRGLKQLVAWAYKNH
GTAVTSSMADKLKDLGFRYATQAAVSISVNDLQVPEAKKALLGEAEEQITATEERYRLGE
ITEVERHTKVIDTWTETNERLVDAVKKNFNQNAPLNSVWMMANSGARGNMSQVRQLVGMR
GLMANPQGEIIDLPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVA
QDVIVREDDCGTTRHIVVEAEDGRFGNRLVGRLTASQVVSAVGEVLAERDTEIDPPLSKR
IEKAGVTAVSVRSPLTCEANRSVCRKCYGWALAHNELVDLGEAVGIIAAQSIGEPGTQLT
MRTFHTGGVSTAETGVVRSVVAGTIEFSAKARVRPYRTPHGVNAQQAEVDFNLSIKPVGK
GKTQKIEITNGSLLFVENGQTIDADVTVAQIAAGAVKKSVEKATKDVICDLAGQVRYEEA
IQPREVTDRQGNITLKAQRLGRMWVLAGDVYNLPPNAQPVVQGDTEVTEGQVLAEASQRS
EYGGDVRLRDSIGDSREVQIVTTAMTLKDFKLLEESTHSGEIWNLEAKDGTRYRLNTIPG
SKIGSGEVVAELADDRFRTGTGGLVKFAPGLAIKKARSAKNGYEVNKGGTLLWIPQETHE
INKDISLLMITDGQWIEAGTEVVKDIFSQTAGVVTVTQKNDILREIIVRSGDFHLSSDSK
ALERFEGDGQMVNPGEEIAKGLSIQDMKYVQTVETPEGKGLLLRPVEEYTIPNEAQLPEL
SHVKQANGPHLGIKATQRLAFKDNELIKSVEGVELLKTQLILETFDTTPQMTVDVEKAPD
KRAKTISRLRLVILESILVRRDTMSDSSHGSTHTELQVEDGISVKAGDVIATTQILCKQA
GVAQLPEATEADPVRRLLVERPEDTTTLSTSGKPVVAVGQRIVDGELLAEGDPSSCCGEV
EAVDSNSVTLRLGRPYMVSPDSVLHVRDGDLVQRGDGLALLVFERQKTGDIVQGLPRIEE
LLEARRPRESAVLCKKPGTVEIKQGDDDESLTVTVIEADDAIGEYPILLGRNVMVSDGQQ
VTAGELLTDGPINPHELLECFFEDLRSRKPLMDAAQEAIANLQHRLVTEVQNVYKSQGVS
IDDKHIEVIVRQMTSKVRVEDAGDTTLLPGELIELRQVEDTNQAMAITGGAPAEFTPVLL
GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGFE
EELQKEAGPHPDILSEDPAGYRRMQNLRPDYTVEMPPAASSTAVLDDPSDADLEATRTRH
NIDPSASNFAAFARPDADNELKEEQVVDAEAVEGLQEEGLLSDD
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgacctcctcctcctctaaatccaacaagtcacgtaagtccagcaaggccgccaaggac
accactccggtgcatgagagcgcgtcccgtcccctcagcaagacgcccccaccgttccga
aaccacatcgtcgacaaacggggcctcaagcagctggtggcctgggcttacaaaaaccac
ggcacggcggtcacctcatcaatggccgacaagctcaaggatctcggcttccgctacgcc
actcaggcggcggtttcgatttccgtgaacgatctgcaagttcccgaggcgaaaaaagcc
ctgctcggagaggccgaggagcagatcacagccacggaggagcgttaccggttgggtgag
atcacggaggtggagcgtcacaccaaggtcatcgacacctggactgagaccaatgagcgt
ctggtggatgcggtcaagaagaacttcaaccagaacgcaccgctgaattcagtctggatg
atggccaactctggcgcccgaggaaacatgtcccaggtgcgacagctggtgggcatgcgg
ggcctgatggccaatccccagggcgagatcatcgacctgccgatccgcaccaacttccgc
gaaggtctcacggtcaccgaatacgtcatctcctcctacggcgcccgtaagggtctagtg
gacaccgccctgcgaacagctgactccggttatctgacccgtcgcctggtggacgttgct
caggacgtcatcgttcgcgaagacgactgcggcaccacgcgccatatcgtggtggaggct
gaagatggacgtttcggtaaccgtttggtcggccgcctcacggcatcccaggtggtgagc
gcagtcggagaggtgctggcagagagggacaccgaaatcgacccacccctgtcaaaacgc
atcgaaaaggcaggggtcaccgcggtgagcgtgcgctctccccttacctgtgaggccaac
cgctccgtctgtcgcaagtgctatggctgggccctggcccacaacgaactggtggacctc
ggcgaagccgttggcatcattgcggcccagtccatcggtgagcccggaacgcagctcacg
atgcgcaccttccacaccggtggtgtgtccacggccgaaaccggtgtggtgcgttccgtt
gtggcgggcaccatcgagttctctgccaaggccagggttcgtccttaccgcacgccccac
ggcgtcaatgcccaacaggccgaggttgacttcaacctctccatcaagccggttggaaag
ggcaaaacccagaaaattgagatcactaatggttcgctgctgtttgttgaaaacggtcag
accatcgatgctgatgtgaccgttgctcagatcgccgctggtgcggtgaagaagagcgtc
gagaaagccactaaggacgtgatttgcgacctggccggtcaggtgcgctatgaggaagcg
atccagcctcgggaagtcaccgaccgtcagggcaacatcaccctcaaggcccagcgtctg
ggccggatgtgggtgctggcaggtgatgtgtacaacctgcctcccaatgcccaaccggtg
gttcagggagataccgaggtcaccgagggtcaggtgctggcggaagccagtcagcgcagc
gaatacggcggtgatgtgcgcctgcgcgactccatcggcgattcccgcgaggttcagatc
gtcacgacagcgatgacgctgaaggacttcaagctgctggaggagtccacccactcagga
gagatctggaatctggaagccaaggacggcacccgctatcggttgaacacgattccaggc
agcaagatcggttctggtgaggtggtcgccgagctggccgacgaccgcttccgaaccggc
accggtggcctggtcaagttcgcccctggtctagcgatcaagaaggcccgatccgccaag
aacggttacgaggtcaacaagggcggcaccttgctctggattccccaagagacccacgag
atcaacaaggacatctccctgttaatgatcaccgacggtcagtggatcgaagcaggcaca
gaagtcgtgaaggacatcttcagccagactgctggcgtcgtcacggtcactcagaaaaac
gacatcctgcgcgagatcatcgtccgcagcggtgatttccacctcagttccgacagcaaa
gccctggagaggttcgagggagatggccagatggtcaaccccggtgaggagatcgccaag
ggtctgagtatccaggatatgaagtatgtgcagaccgtggagaccccggagggcaaaggt
ctgctgttgcgtcccgtggaggaatacaccatccccaacgaggcgcaactgccagagctg
tcgcacgtcaagcaggccaatggcccccacctgggcatcaaggccacccagcgactggcg
ttcaaggacaacgagctgatcaagtcagtggagggcgttgaactgctcaagacccagctg
atcctggagaccttcgacaccacgccgcagatgaccgtggatgtggagaaggcccctgac
aaacgggccaagacaatctcccgtctgaggctggtgatcctcgagtcgatcctggtgcgt
cgcgacaccatgtccgactccagtcacggttccacccacaccgagctgcaggtggaagac
ggcatctccgtcaaagctggcgatgtgattgccaccacccagatcctctgcaagcaggcc
ggtgttgcgcagctgccagaagccactgaggcagatcccgtccgccgtttgctcgttgag
cgtccggaagacaccaccaccctcagcacctccggcaaaccggtggtcgctgttggtcaa
cgcatcgtcgatggcgaactgctggctgagggtgatccctccagctgctgcggtgaggtg
gaagctgttgacagcaacagcgtgaccctgcgcctcggccgtccctacatggtgtctccc
gactccgtcctgcacgtccgagacggtgatctggttcagcgcggtgacggtttggccttg
ctggtgtttgaacgtcagaagactggtgacatcgttcagggtctgcctcgaatcgaggaa
ttactggaggcccgtcgtcctcgtgagtcggcagtgctgtgcaaaaagcccggcacggtg
gagatcaagcaaggtgacgacgacgagtcactcacggtgacggtgatcgaagccgatgac
gccatcggcgaatacccgatccttctgggtcgcaacgtaatggtcagcgatggccagcag
gtgaccgccggtgagctgctcaccgatggtccgatcaacccccatgagctgctggagtgt
ttcttcgaagaccttcgcagccgtaagccgttgatggatgcggcgcaggaagcgattgcc
aacctgcagcaccgtctggtgaccgaggtgcagaacgtctacaaatcccagggcgtgtcg
attgacgacaagcacatcgaggtcatcgttcgtcagatgaccagcaaggtgcgggtcgaa
gatgccggtgacaccaccctgctgcccggtgagctgatcgaactgcgtcaggtggaagac
accaaccaggccatggcgatcaccggtggtgcccccgcggaattcactccggtgctgttg
gggatcaccaaggcttcgctcaacaccgacagcttcatttccgccgcctccttccaggag
accacgcgcgtgctcacggaagctgccatcgagggcaagagcgattggctgcggggcctc
aaggagaacgtgatcatcggtcgccttatccctgcaggcaccggcttcagtggtttcgaa
gaggagctgcagaaggaggcaggtcctcacccggacatcctgtcggaggatcccgccggc
taccgccgcatgcagaaccttcgtcctgattacaccgtggagatgcctccggccgccagc
tccacggctgtgttggatgaccccagcgatgccgatcttgaggcgacccgcacccgtcac
aacatcgacccctccgccagcaacttcgccgcgtttgcccgccccgacgccgacaatgag
ctgaaggaggagcaagtcgttgatgctgaagctgttgaaggtcttcaggaagagggcctg
ctttcagacgactga
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