Synechococcus sp. WH 8103: SynWH8103_01052
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Entry
SynWH8103_01052 CDS
T04859
Symbol
crhR
Name
(GenBank) cyanobacterial RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
synw
Synechococcus sp. WH 8103
Pathway
synw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SynWH8103_01052 (crhR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synw03019
]
SynWH8103_01052 (crhR)
03009 Ribosome biogenesis [BR:
synw03009
]
SynWH8103_01052 (crhR)
Enzymes [BR:
synw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SynWH8103_01052 (crhR)
Messenger RNA biogenesis [BR:
synw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SynWH8103_01052 (crhR)
Ribosome biogenesis [BR:
synw03009
]
Prokaryotic type
rRNA helicases
SynWH8103_01052 (crhR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
B12-binding
DEDD_Tnp_IS110
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CRY91786
LinkDB
All DBs
Position
888880..890676
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AA seq
598 aa
AA seq
DB search
MNDQQLGETPCAVDLSASSLPEQATSEQASADVFTTTIDAQQPESGFDGFGFSEALLKTL
ADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLASGQKTPQALVLA
PTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRRGVDVVVGTPGRVMDHMR
QGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRLSKHY
LKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFARTKAITLTV
AETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVDRIGLVINYD
MPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFINNLERATGQPIEAMEVPGNSAINQ
GRLDRLHKRLSEAAHNERPYEEEAALLRELLQRIGTELELSPEQLAYAALSMAIGPDPLL
RQKGDDEWIHNNQRRDRDRDRDRGGERRERRSDRPARAPEENMQRYRVEVGHRDRVKPGN
LVGAIAGETGLQGRAIGRIQIFDNHSFVDLPKGMPEDVFNSLRRLRVMNRELQITQAS
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaccaacagctcggggagaccccgtgcgccgtcgatctgtccgcatcttcgctg
cctgagcaggccacttcagagcaggcgtctgcagacgtcttcaccacaacgatcgacgcc
cagcaaccggaatcgggtttcgatggtttcggattcagtgaggcattgctgaagacgctg
gcggataaggggtacagcgagccttcaccgattcagaaggcggccttccctgaattgatg
ctggggcgtgacctggtgggccaggcccagaccggtaccggaaaaacggcggccttcgcg
ttgccattgctcgaacggctcgccagtggccagaaaactccgcaggccctcgtgctggca
cccacccgcgaactggccatgcaggtggctgattcgttcaaggcctattccgctgggcat
ccgcatctgaaggtgctggcggtttacgggggcaccgacttccgttctcagatcaacacc
ctgcgccgtggcgtggacgttgtggtggggacaccgggccgggtgatggatcacatgcgg
cagggcaccttggacacctccggcctacgcagcctggtgctggatgaggccgacgaaatg
ctgcggatgggcttcatcgacgatgtcgagtggatcctggagcaattgccgcaggaacgg
caggtggtgctgttctccgcgaccatgccaccggagatccgtcgcctgtcgaagcactat
ctgaaggatccagccgaggtcacgatccgcaccaaggatcaggaaggcaaacggattcgc
cagcgttcgatcaccgtgccgatgccccacaagctggaggctctgcagcgggtgctcgat
gcctgcggtggtgaaggagtcattatttttgcccgcaccaaggccatcaccctcaccgtg
gccgagacgcttgaggcgggcgggcatcaggtggccgtgctcaacggtgatgtgccgcag
aaccagcgggagcggacggtggaacggctgcgcagtggttccgtcgacatccttgtggcc
accgatgtggccgctcggggcctggatgttgatcgcatcgggttggtgatcaactacgac
atgccgttcgacagcgaggcctacgtccaccgcatcggtcgtaccggccgggccggtcgc
acgggggaggccgtgctgtttgtcaccccgcgcgagcgtcgcttcatcaacaaccttgag
cgggcaacaggccagccgatcgaggcgatggaggtgccaggcaactccgcgattaaccag
ggtcgactcgatcgtttgcacaaacgcctcagcgaagcagcccacaacgagcggccctat
gaggaagaagcggcgctgctgagagagctgttgcaacgcatcggcacggaactggagctc
agccctgagcaactggcctacgccgccctcagcatggccatcggcccagaccctttgctg
cgccagaagggcgacgacgagtggattcacaacaaccagcgccgcgatcgtgatcgtgac
cgtgatcggggcggcgaacggagagagcgccgctccgatcgtccggcccgtgccccggag
gagaacatgcagcgctatcgcgtcgaggttgggcaccgtgatcgggtcaagcccggaaac
cttgtcggggccatcgccggagaaaccggtctgcagggccgtgcgatcggccggattcag
attttcgacaaccacagctttgtggatctgcctaaaggcatgccggaggatgtctttaac
agcttgcggcggcttcgggtgatgaaccgggagctacagatcactcaggcgtcgtga
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