Synechococcus sp. WH 8103: SynWH8103_01166
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Entry
SynWH8103_01166 CDS
T04859
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
synw
Synechococcus sp. WH 8103
Pathway
synw03030
DNA replication
synw03430
Mismatch repair
synw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
synw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SynWH8103_01166 (dnaE)
03430 Mismatch repair
SynWH8103_01166 (dnaE)
03440 Homologous recombination
SynWH8103_01166 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
synw03032
]
SynWH8103_01166 (dnaE)
03400 DNA repair and recombination proteins [BR:
synw03400
]
SynWH8103_01166 (dnaE)
Enzymes [BR:
synw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SynWH8103_01166 (dnaE)
DNA replication proteins [BR:
synw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SynWH8103_01166 (dnaE)
DNA repair and recombination proteins [BR:
synw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SynWH8103_01166 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CRY91898
LinkDB
All DBs
Position
1031008..1034526
Genome browser
AA seq
1172 aa
AA seq
DB search
MAFVPLHNHSDYSLLDGASQLPAMVERAKELGMPAIALTDHGVMYGAIELLKLCKGSDLK
PIIGNEMYVINGSIDDPQPKKEKRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGIFSR
ACIDKHLLKTYSEGLIISTACLGGELPQAILRGRPDVARNVARWYQEVFGEDFYLEIQDH
GSPEDRIVNVELVRIAQELGIQLVATNDAHYLSKQDVEAHDALLCVLTGKLISDEKRLRY
TGTEYIKTEEEMNRLFVDHLEPDVVRQAIANTVAVAEKVEDYDILGHYQMPRFPIPEGHT
AVTYLREVTEQGLRERLELSSDASIPENYAERMAHELKIMEQMGFPTYFLVVWDYIRFAR
EQKIPVGPGRGSAVGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDFCIERRS
EVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRGKPAK
LKAMIGEESPTPEFREKYESDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADPLDELVP
LQRNNDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTRLDPDKLPPE
DADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDAGLIPKFI
NRKHGREAIDFAHTILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRRAMGKKKV
AEMQKHRGIFVKGAAERGVDEAVSDELFDQMVLFAEYCFNKSHSTAYGAVTYQTAYLKAH
YPVAYMAALLTVNAGAADKVQRYIANCNAMGIEVMPPDVNASRTDFTPNGDRILFGLSAV
RNLGDGAIRQLIRSRDSDGPFRSLPDLCDRIPSSVLNRRGLESLIHCGALDSMDPAANRA
QLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPNDEDGASDLSLAPKAAPVADYGPAEK
LKLEKELLGFYLSDHPLKQLTPSARLLAPIGLGALEEQPDKAKVSAVTMITELRQVTTRK
GDRMAILQLEDLSGSCEAVVFPKSYARLADHLMTEARLLVWAGVDRRDDRVQLIIDDCRA
IDDLAVLLVELSSQQASDIAIQHKLRECLTQYRPEREELGVKVPVIAAVRDGHSVRYVRL
GSQFCVKDAEAALQALKTQAFTARHSEPMVLG
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggcattcgttccgctccacaaccacagcgattacagcctgctggatggcgcatcgcag
cttccggccatggtggagcgcgccaaggaactgggcatgccagccattgccctgacggat
cacggggtgatgtatggcgccattgagctgctgaaactctgcaagggctccgatctcaag
ccgatcatcggcaatgagatgtatgtgatcaatggatccatcgatgatcctcagccgaag
aaagagaagcgctaccacctggttgttctggccaagaatgccgtcggctaccgcaacctg
gtgaagctgacgagcatcagccatctgcggggaatgcgggggcgggggatattttcgcgc
gcctgcattgataagcaccttctcaaaacctatagcgaaggtttgatcatctccaccgcc
tgtctcggtggagaattgccgcaggcaatcctgcgggggcggccggatgttgcccgcaat
gtggcccgttggtatcaggaggttttcggggaagatttctatcttgaaattcaggatcat
ggctctcctgaagacaggattgtcaacgttgaacttgtgcgcatcgcccaagaactcggc
atccaattggtggccaccaacgatgctcattacctgagcaagcaggatgtggaggcgcac
gatgccttgctttgcgtgctcacgggcaagctcatcagcgacgagaaacgacttcgttac
accggcacggaatatatcaagaccgaagaggagatgaaccgactcttcgtggatcatcta
gagccggatgttgtgcgtcaagccatcgccaacaccgtggctgttgccgagaaagttgag
gactacgacatcctcggccactaccagatgcctcgctttcccattcctgagggacacact
gcagtgacctacctgcgagaggtcacagagcaaggtttgcgggagcgactcgagctgtcc
tccgatgcatccattccggagaattacgccgagcggatggcccatgagctcaaaatcatg
gaacagatggggttccccacctacttccttgtggtgtgggattacatccgtttcgcgcgt
gaacaaaagattccagtggggcccggccgaggttcggcggtgggatccctcgtggcttat
gcccttggcatcaccaatattgatccagtgaccaacggattgttgtttgaacgtttcctc
aatccggaacgcaaatcgatgcctgatattgacaccgacttctgcattgaacgacgtagt
gaagtgattgattacgtcactgaacgctatggcgacgacaaagtggcccagatcatcacc
ttcaacaggatgacatccaaggctgtgctgaaggatgtggcccgggtcttggacattccc
tacggcgatgccgaccggctggcgaaattgattcctgtggtccgtggaaagcccgccaaa
ttgaaggccatgattggtgaggagtcaccaacgccggaattccgcgagaaatacgaatcc
gacccagttgtgaagcgctgggtagatatggccatgcgcatcgagggaaccaacaaaacc
ttcggtgtgcatgcagcgggcgtggtgattgccgctgatccattggatgaattggtgcca
ttgcagcgcaacaacgatggtcaggtgattacgcagtacttcatggaagatgtggaatcc
atgggtctgttgaagatggactttctgggcctcaagaatctcacgatgattgataaaacc
ctggaattggtggaagtcagcagcggaacgcggctggatcccgacaagcttccgcctgag
gatgccgacaccttcgccttgctggcccgtggggatctggaaggcatcttccagctggag
tccagtggcatgcgtcagatcgtccgtgatctgaagccgtcctccctggaggacatttca
tcaatcctggcgctgtatcgacccgggcctttggatgccggcctgattcccaaattcatc
aaccgcaaacatggccgcgaagccattgacttcgcccacacgattttggagccgattctg
agtgaaacctacggaatcatggtctaccaggagcagatcatgcgcattgcccaggatctc
gccggttattccctcggccaggcagatctgcttcggcgggcgatgggcaagaaaaaagtg
gcggagatgcagaagcatcgcggcatctttgtgaagggtgctgccgagcggggtgtggat
gaggcggtctcggatgaactgtttgatcagatggtgctgttcgccgaatactgcttcaac
aagagccattccacggcctatggcgccgtcacctatcaaacggcctatctgaaagcgcat
taccccgtcgcctacatggccgccctgctcacggtgaatgccggtgcagccgacaaggtg
cagcggtacatcgccaattgcaatgccatgggcatcgaggtgatgccaccggacgtcaat
gcctcccgcacagatttcactccgaacggcgatcgcatcctcttcggtttatccgctgtt
cgaaaccttggcgatggggccatccgtcagttgattcgttcacgggatagcgatggcccg
ttccggtcgctgccggatctttgtgatcgcatcccttcctcggtgctcaaccgccgcgga
ctggaatctctgattcactgcggtgccttggattccatggatccagccgctaaccgagcc
cagttgatggctgatctcgatcttctcctcgactgggcctcgtcgagagccaaggaccgt
gacagtggccagggcaacctgttcgacctgatggcagctccgaacgatgaggacggtgcc
tctgatctcagtctcgctcccaaggccgctccggtggcggattacggcccagccgagaag
ctcaagctggagaaggagctgcttggtttctatctgtccgaccatccgctcaagcaactc
acacccagtgctcgactcctcgcacccatcggcctgggggcgcttgaagagcaaccggac
aaggccaaggtcagtgccgtcacgatgatcactgagttgcgtcaggtcaccacccgcaag
ggggaccgaatggcgatcctccagctggaggatctctccggcagttgcgaagccgtggtg
tttcccaagagttatgcccgactcgcggaccatctgatgacagaggcgcgtcttctcgtc
tgggcgggcgtcgatcgtcgggatgatcgcgttcagttgatcattgatgactgcagggcc
attgacgacctagctgttctccttgttgaactctcctcccagcaggccagcgacatcgcc
atccaacacaaattgagggagtgcttgacgcaatatcgacctgagcgtgaggagcttggc
gtcaaagtgcccgttatcgctgcggttcgcgatggtcattcagttcgctatgtccgactg
ggttctcagttctgcgtcaaggacgcggaagctgcactgcaagccctgaagacacaggcc
ttcacggcccgtcactcagagcccatggttctgggttga
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