Synechococcus sp. WH 8103: SynWH8103_01357
Help
Entry
SynWH8103_01357 CDS
T04859
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
synw
Synechococcus sp. WH 8103
Brite
KEGG Orthology (KO) [BR:
synw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
synw03016
]
SynWH8103_01357 (rnb)
Enzymes [BR:
synw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SynWH8103_01357 (rnb)
Transfer RNA biogenesis [BR:
synw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SynWH8103_01357 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CRY92086
LinkDB
All DBs
Position
complement(1184038..1186071)
Genome browser
AA seq
677 aa
AA seq
DB search
MASDFQTDAIVGVLLKGQPLIGRLLSCKGSKAVLAFGGQRRDQEIPLRELVPCGELSDSV
RRSVLPTPEQVQSIVLSPRVSAEAWWLLVSDVTDDTLPCISLSDLTDLLVGQPDLIALAA
VWSWLNGPQIWFRLRRDRTLQARPLNEIRQQRLKQRREHLQREHDLRQLALLQESAPLTE
QRRELLDPTWSDRLDQLVDLVHGPEADLGEMPGLGLLQLLGLPPDRKALKTWLVARELLD
PHQPSALRGSAWSSQLPEANAEIIDELLARAADSCSGDDTRVDLTEQRVYTLDDASTQEI
DDGLALEPGDGGPWIWIHIADPARLIEPDSPLDREARRRATSLYLADGVLPMLPLKLATE
IFSLRAGQRCPALSVGVLLDDEGAVLASRCQRSWVQPRYRLTYEDGDELIELVPPGDEDL
AQLSSLLKRRFNWRQRRGAINFERQEGRFRRGATGPELQVIDPSPARVMVSEAMLLMGAV
VAEIGRTEGMALPYRSQPPAELPSAQELAEIPDGPARDAAVKRCLSRGLQGTSPMPHFSL
GLEAYVQATSPIRRYADLLAHRQLMAWIEQRPVMSEPLLREQLDALEDPLRQAIQISRED
QRHWQQVWLEQHRDEQWSVQFLRWLRPQDRLALVHVPDLAMDLVGHADGEDPAPGQLLTM
TVLHVDPDRGELKLRFQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
ttggcaagtgatttccagaccgacgccatcgtcggcgttctgctcaagggtcagcccctc
atcggccgcctgttgtcctgcaagggcagcaaggcggtcttggcatttggtggacaacga
cgggatcaggagattccactgcgggagcttgttccctgcggagagctgagcgactcggtt
cgccgttctgtgctgcccacaccggagcaggtgcagtccattgttctgtcaccaagggtc
agtgcagaggcctggtggctgctggtgagtgatgtcacggatgacaccctcccttgcatc
tccctgagcgatctgaccgatctgctggtgggacagcctgatctcattgcgctggcggcc
gtctggagctggctgaatggtcctcagatctggttccgactgcgacgggatcggaccctg
caggctcgccccttgaatgagattcgccaacagcggctcaaacagcgacgggagcatttg
caacgggagcatgaccttcggcagttggccctgttgcaggagtcagctccactgaccgag
caacgacgagagctgctggatccgacctggtccgaccgccttgatcagctggttgacctg
gtccatgggccggaagcggacctgggcgaaatgcctggactgggcttacttcagctgctg
gggctgccccccgatcgaaaggctctcaagacctggcttgtggcacgtgagctgctggat
cctcaccaacccagcgcgttgcgcggcagtgcgtggtcgagccagcttccagaggcgaac
gccgaaatcatcgacgagttgctggccagggcagctgacagctgttccggtgatgacacc
cgcgtggatctgacggaacaacgggtttacaccctggatgacgccagcacccaggaaatc
gacgacggcctggcactggaacctggcgatggtggaccctggatctggattcacatcgct
gatccggcacgactgatcgaaccggacagccccctggaccgtgaggcccgtcgacgggcc
accagcctgtatctggcggatggggtgctgccgatgctgccgctgaagctcgccacagag
atcttcagtctccgtgcagggcagcgttgccctgctctcagtgtcggtgtgctcctggat
gacgagggtgccgtcctggccagccgctgtcagcgctcctgggtgcaaccccgttaccgg
ctcacctatgaggacggcgatgaactcatcgaactggtcccccccggggatgaggacctc
gcccagttgtcctccctgctcaaacgtcgcttcaactggcgtcagcgtcggggagccatc
aacttcgaacgccaggaaggacggttcaggcgtggcgcaaccggtcctgagcttcaggtg
atcgatccctctccagctcgagtgatggtcagtgaggcgatgttgctgatgggtgccgtt
gtggcggagatcggtcgcacggaagggatggccctgccctatcgcagtcagccaccagcg
gagctccccagtgcgcaggagttggcggagatcccggatggccctgcccgtgatgcagcg
gtgaaacgctgtctcagtcgaggtcttcagggcacatcaccgatgccccacttcagtctc
ggattggaggcctacgtgcaggccacctcacccatccgtcgttacgccgacctgttggcc
catcgccagttgatggcctggatcgagcaaaggcccgtgatgtcggagcccctgctgcgg
gagcagctggatgcgttggaggatcccctgcggcaggcgatccagatcagtcgagaggac
caacgccactggcaacaggtgtggctggaacaacatcgcgacgaacagtggtcagtgcag
ttcctgcgttggctacgccctcaggatcggctggcgctggttcacgtgccggatctggcg
atggatctggttggtcatgccgacggggaagatccagcgccaggccagctgctgacgatg
acggtgcttcatgtcgatccggaccggggcgagctgaagctgcgctttcagtga
DBGET
integrated database retrieval system
