Synechococcus sp. WH 8103: SynWH8103_02128
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Entry
SynWH8103_02128 CDS
T04859
Symbol
topA
Name
(GenBank) DNA topoisomerase I, omega subunit
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
synw
Synechococcus sp. WH 8103
Brite
KEGG Orthology (KO) [BR:
synw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
synw03032
]
SynWH8103_02128 (topA)
03400 DNA repair and recombination proteins [BR:
synw03400
]
SynWH8103_02128 (topA)
Enzymes [BR:
synw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SynWH8103_02128 (topA)
DNA replication proteins [BR:
synw03032
]
Prokaryotic type
DNA Topoisomerases
SynWH8103_02128 (topA)
DNA repair and recombination proteins [BR:
synw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SynWH8103_02128 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
CRY92843
LinkDB
All DBs
Position
complement(1746002..1748599)
Genome browser
AA seq
865 aa
AA seq
DB search
MGHVRDLPNNASEIPASAKGQKWANLGVNTEADFDPLYVVPKDKKKVVRELKDALKGADQ
LLLATDEDREGESISWHLLQLLAPKVPVKRMVFHEITKEAIGKALDQTRDLDMELVHAQE
TRRILDRLVGYTLSPLLWKKVAWGLSAGRVQSVAVRLLVQRERARRAFRSGSYWDLKAQL
EHSGSGFEAKLTHLVGRRIATGNDFDESTGGLKAGSEVRLLTEKEARALAETVQAATWSV
DAVEEKPTVRKPVPPFTTSTLQQEANRKLRLSARETMRCAQGLYERGFITYMRTDSVHLS
DQAISASRSCVEGLYGKEYLSKGPRQFSNKARNAQEAHEAIRPSGESFRTPGDTGLEGRD
LAVYDLIWKRTVASQMAEARLTMLSIDLSSGEASFRASGKRIDFPGFFRAYVEGSDDPDA
ALEGQELLLPALAVGDAPAPKQVEPLGHQTQPPARFSEASLVKMLEKEGIGRPSTYASII
GTIVDRGYSTLQGNALTPSFTAFAVTALLEEHFPDLVDTSFTARMENTLDEISHGKVEWL
PYLEGFFKGDQGLETQVQQREGDIDPGASRTVDLEGLSCVVRIGRFGAYLESKRVGDDGE
EELIKATLPREITPADLDADQAELILKQKADGPESIGEDPETGDLVYLLFGQYGPYVQRG
QVSDENPKPKRASLPKGQKPEDLTLDDALGLLRLPRLLGEHPDGGRVQAGLGRFGPYVVW
DKGKSEKDYRSLKGDDDVLAVGLSRALELLAMPKRGRGGRTALKDLGKPEGSEETIQVYD
GPYGLYVKQGKVNASLPEGKGADDVTLEEAVELLAAKASAKKSSRKTTAAKKAPAKKTAA
KKPPATTKSGRLRASAVRVIKPADS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggccatgtgcgggatcttcccaacaacgccagcgagatccctgcgtccgccaagggt
cagaaatgggccaaccttggcgtcaataccgaagccgacttcgatcccctgtacgtggtg
ccgaaggacaagaagaaggtggtgcgcgagctaaaagatgcgttgaagggcgcggatcag
ctgctgctggccactgacgaagaccgcgagggggaaagcatcagctggcacctgctgcag
ctgttggcgccgaaggttccggtgaagcggatggtcttccacgagatcaccaaggaagcc
atcggcaaggcgctggatcagacccgtgatctcgacatggagctggtgcatgcccaggag
acgcgccggatcctggatcgtctggtggggtacaccctctctcccctgctctggaaaaag
gtggcatgggggctttccgctggccgggtgcaatcggtcgccgttcgcctcctggtgcag
cgggaacgggcccggcgggcctttcgcagcggcagttactgggatctcaaggcccagctc
gagcattctggcagtggtttcgaggccaaattgacccatctggttggccgacgtatcgcc
accggcaacgatttcgacgaaagcaccggtggcctcaaggccggcagcgaggtgcggctg
ctgacggaaaaggaggcccgcgctctggcggaaacggttcaggccgcgacctggtcggtg
gatgctgttgaggagaagcccacggtgcggaagccggtgccgccgttcaccaccagcacc
cttcagcaggaggcgaatcgcaaactacgcctctcagcgagggagacgatgcgctgcgcc
cagggcctctacgagcgaggtttcattacttacatgcgaaccgactcggttcatctttcg
gatcaggcgatcagcgcgtcccgcagctgtgtggagggcctctacggcaaggagtatctg
agcaaggggccgcggcaattcagcaacaaggcacgcaatgcccaggaggcccacgaggcg
attcgcccctccggcgagagcttccgcacacctggcgataccgggcttgaaggccgtgac
ctggcggtgtacgacctcatctggaaacgcaccgttgccagtcagatggcggaagcccgg
ctgacgatgctgtcgatcgatctcagctctggagaggcaagtttccgagccagtggcaag
cgaatcgattttccgggcttcttccgtgcctacgtcgagggcagcgacgaccctgatgca
gccctggagggccaggagctgcttctgcccgcactggcggtgggtgatgcccctgccccc
aagcaggtggaacctttgggccaccagacccagcccccagcccgtttcagcgaagcctct
ctggtcaagatgctggagaaggagggcatcggacgaccctccacctacgcctcgatcatc
ggcacgattgttgatcgcggctattccacgctgcagggcaatgccctgacccccagcttc
acagcctttgctgtgaccgccctgctggaagaacattttccggatctggttgatacgagc
ttcacggctcggatggagaacactcttgatgagatctcccacggcaaggtcgaatggttg
ccgtatttggaagggtttttcaaaggtgatcaggggctggaaacccaggtgcagcaacgg
gaaggggacatcgatcccggagcctcccgaaccgtcgacctcgagggcctgtcctgcgtg
gtgcgcatcgggcgattcggtgcctacttggagtccaaacgggtcggcgatgacggcgag
gaggagctgatcaaagcgacgctcccccgggagatcacaccggcggatctggatgcggac
caggcggaactgatcctgaagcagaaggcagatggcccggaatccatcggcgaggaccca
gagacgggcgacttggtgtacctcctgttcggtcagtacgggccctatgtgcagcgcgga
caggtcagtgatgagaatccaaagcccaaacgggcctcactgcccaagggccagaaacct
gaggatctgaccttggatgatgctctcggcctgctccgactcccccgcttgttgggggaa
catcccgatggcgggcgggttcaggctggtctcggacgtttcgggccctatgtggtttgg
gataagggcaagagtgagaaggactaccgctccctcaagggtgacgacgatgtgctggcg
gttggcctcagtcgcgccttagagctgctggccatgccgaaacggggccgcggcggccgg
acggcgctgaaggatctcggcaaacccgagggcagcgaggagacgattcaggtctacgac
ggtccctatggcctctacgtcaagcagggcaaggtcaatgcctccctgcctgaaggcaaa
ggggcggacgatgtcacgctggaggaggccgtggaactgctggcggcgaaggcttctgcc
aagaagagcagccgcaagaccacggcggccaaaaaagctccggccaagaaaaccgccgcc
aagaaacctccggccaccaccaagagcggacggctgcgggctagtgccgtgcgggtgatc
aaacccgccgacagctga
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