Synechococcus sp. WH 8103: SynWH8103_02400
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Entry
SynWH8103_02400 CDS
T04859
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
synw
Synechococcus sp. WH 8103
Pathway
synw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
synw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SynWH8103_02400 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synw03021
]
SynWH8103_02400 (rpoA)
03400 DNA repair and recombination proteins [BR:
synw03400
]
SynWH8103_02400 (rpoA)
Enzymes [BR:
synw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SynWH8103_02400 (rpoA)
Transcription machinery [BR:
synw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SynWH8103_02400 (rpoA)
DNA repair and recombination proteins [BR:
synw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SynWH8103_02400 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_5
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
CRY93090
LinkDB
All DBs
Position
1948242..1949180
Genome browser
AA seq
312 aa
AA seq
DB search
MLQYQIDRIEHQVEEDRSQSGVFLIGPLERGQATTLGNALRRVLMGGLEGSAVTAIRIAG
VNHEYATVPGVREDVLDILLNCKELSVNSRSPELEIGRLVVAGPAEVTAKDLQFSSQVEV
VDGNRSIATVADGYSLELEVHVERGVGYRPVDRHSEDTSAIDLLQIDAVFMPVIRVNFTI
DETAVAEGGSARERLRMEIVTDGSITPDDALAQSANYLIELFQPLATVTLVEEPGIEPEP
SAEAQIPLEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALER
IGISIPQSRTSA
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaataccagattgaccgcatcgagcatcaggtggaagaggatcgctcccagagt
ggagtgttcctcatcggtccccttgagcggggtcaggcgaccaccctgggcaacgccctg
cgacgcgtcctcatgggcggcctcgaaggcagtgccgtcaccgccattcggatcgctggt
gtcaaccacgagtacgccactgtccccggtgtgcgtgaggacgttctcgacatccttctg
aactgtaaggagctctccgtaaacagccggtcgcctgagctcgagatcggtcgtcttgtt
gtggctggtcccgctgaggtgaccgccaaagacctgcagttctcctcccaggttgaggtg
gtagacggcaatcgttccatcgccaccgtggccgatggttacagcctcgagcttgaggtc
cacgtggaacgcggcgtgggttaccgacctgtggatcgccacagcgaggacaccagcgcc
atcgacctgcttcagatcgatgcggtgttcatgccggtgatccgggtgaatttcaccatc
gatgaaaccgccgtcgccgaggggggatccgcccgagagcgtctgcgaatggagatcgtc
accgacggctccatcacccccgatgacgctctggctcaatcagccaactatctgattgag
ttgttccaacctctcgccacggtgaccctcgtggaggagccggggatcgaacccgagccc
tctgcagaagcccagatcccgctggaggaactcaacctttccgtgcgggcttacaactgc
ctcaagcgtgcccaggtcaactccgtgtccgacctgatgggtttcagctacgaggatctg
ctggagatcaagaacttcggttccaaatcagccgacgaagtgatcgaagccctcgaacgc
atcggcatctccatcccccagagccgcacctctgcctga
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