Synechococcus sp. SynAce01: BM449_01015
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Entry
BM449_01015 CDS
T08413
Name
(GenBank) RNA polymerase subunit sigma-54
Organism
syny
Synechococcus sp. SynAce01
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Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Sigma54_activ_2
Sigma54_activat
Fer4_5
BTB_KLHL33
Fer4
Fer4_10
Fer4_2
AAA_16
Fer4_21
AAA
AAA_5
Fer4_16
Fer4_7
Motif
Other DBs
NCBI-ProteinID:
APD47155
UniProt:
A0A1J0P784
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Position
complement(201687..204296)
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AA seq
869 aa
AA seq
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MGLEGMPAQEESRIQEYSNWLQFHRLWGQLPDLARKELARSLHLLRVEAGTLIYREGQSS
LGLYLLKWGAVEIQRLSPIGQSLIRQRSAGELFGYVSLLANPGSAQHQTQAIALTASEIW
FLPQRLLRQLTQQYTEIEHLFNTVLAEDLNAFSTRIAREQQRVQGLRDYICSVPAGETIL
GSSKFSQKLNDTIDQAATLLQPVVLLGPKGSGKTFVAGLIHSRSGLADQPFAELDCGQLP
RSAHGALNTDLLFGREGSEAGLIELMERGTLLLSNLQVLSVEDQARLIAYCNTGNIQLNV
ASNSTPKTFPSLVRLIFTSPEKLVLSGFEGMTIKLFSLSQRKADIPDFTSHFLAQSCQAQ
SRPLMTLSQSDLRRLISYAYPGNIIELAAILNRAVIMSPAGQLIIPEQALWSVQSPRNAF
RVDLLTQIPWLRGLLLSRWYPEGLWIVMMALFVPVTLAGFLGPQTRESSVTLNFFWAWWW
PGYLLLFVFIGRLWCAVCPFMITAEWLRRASLWLFPRQQLPWPTQWLNRWGAWVLFGGFV
VIYLWEKLWDLPNSAYLSAWLLLAITAGAVICSLIYERRLWCRYLCPIGGMNGMFAKLAM
VELRSDQQVCGSQCSTFGCYKGSDATTVTFADSLASEGQATGGCPLYSHPAQLQDNRDCV
LCMTCLKACPNRSVQLNLRFPTTDLLENHQGFWAEVALLLLLLGGVLMHHSERILSAFGF
PAVPVDAQHFWSSAVIALLLLSLPALATYLAHAIARRFDPDQPPYLTAIYAYLPFTLALN
LAHYVPAAMTEAGKIVPVFARSLGFSGIGLPILTWSADVAVFIQGVTLLAALVFSLYPLL
RITKRTLLSNLPHLLLMVGLTVGGFWLIV
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggccttgaaggaatgcctgcccaagaggagagccgcattcaagagtactcaaactgg
ctgcaattccatcgcctctgggggcagctacctgatcttgcccgaaaagaattagcgcga
tcgctacacctgctgagggttgaagctggaacgctgatctaccgtgaaggtcaatcgtca
ctgggattgtatctgctgaagtggggggccgtagagattcagcggctttctccgatcggt
caatcactcattcgtcagcgcagtgcgggtgagctttttggctacgtttcgctcctggcc
aatccaggcagcgcccaacaccagacgcaggccatcgccctgacagccagtgaaatctgg
tttttgccccagcgtctgttgcggcagctcacgcagcagtacaccgagattgagcatctg
ttcaatactgtgctggctgaagatctcaatgcctttagcacccgtatcgcccgggaacag
caacgcgtccaagggttgcgggattacatctgctcggtgccagcaggcgagaccatcctg
ggcagcagcaaattcagccagaagctgaacgacacgattgaccaagctgccacgctgctc
cagccggtcgtcctgctcgggccgaagggctctggtaagaccttcgttgccgggctgatt
catagtcgctcgggcctggcagaccaaccttttgcagaactggactgtgggcagctgcct
cgatcagcacatggtgccctcaacacagatttgttatttggccgtgaagggtctgaggcc
gggctcattgaactaatggagcgtggaacgttgttgctgagcaacctccaggttctcagt
gtggaggatcaagctcgtctgattgcctattgcaacactggcaacattcagctcaatgtt
gcgtccaatagtacccccaaaacttttccgtcgttggtacggctcatttttacatctcct
gaaaagttggtactttcaggctttgagggtatgacgatcaaactgttcagtctttcccag
cgaaaggctgatattcctgactttactagtcacttcctcgcgcagtcttgtcaagcccag
agtcgtccactgatgaccctctctcagtcggatctacgccgcctgatcagctatgcctat
cccggcaacatcatagagctagcggcgattcttaaccgtgcagtgattatgtcacctgcc
gggcagttgatcattccagagcaggctctttggtcggtgcagtcgccaagaaatgccttc
cgcgtcgacctgctcacccagattccctggctaaggggtcttttgctgagccgctggtac
cccgaaggtctgtggatcgtgatgatggcgctttttgtgcccgtaaccctggctggattt
ttggggccgcaaacacgagagagcagtgtgaccttgaatttcttttgggcttggtggtgg
ccgggatatttgctgttgtttgttttcattggccggctgtggtgtgcagtttgtcccttt
atgatcacagcggaatggttgcgacgcgcctcgctgtggttattccctcgccagcagctg
ccgtggccaacccaatggctcaatcgctggggggcgtgggtgctattcggcggctttgtg
gtgatttatctatgggaaaagctctgggacttgcccaacagtgcctatctctcggcctgg
ctgctcctggcgattaccgcaggagcggtgatttgtagcctgatctacgagcggcgtttg
tggtgccgctatctctgccccatcggtggcatgaatggcatgtttgccaaactcgccatg
gttgagttgcgctcagatcaacaggtgtgtggtagccaatgcagcacttttggatgctac
aaggggagcgacgctacgactgttacttttgccgattcgcttgctagcgaagggcaggcg
acggggggctgcccgctctattcacatcccgcacagcttcaagataatcgtgattgtgtt
ctgtgcatgacctgcttgaaagcctgcccgaatcgttcggttcagcttaatctgcgcttt
cccaccacagatctgctggagaatcaccagggattctgggctgaagtggccctcctgttg
ttgcttttgggcggtgtactgatgcaccacagcgaaagaatcctctctgcatttggattc
cctgctgtaccggttgatgcccagcatttttggagcagcgccgtgattgcactgctcttg
ctcagtcttccggctttggcgacctatctggcgcatgcgatcgcgcgccgatttgatccc
gaccagcctccctatctcacggctatttacgcttatcttcctttcaccctggctcttaat
ctggctcactatgtgcctgcggcgatgacagaagcggggaagattgtgccagtttttgcc
cgcagccttggattcagcgggattggtttacccattctcacctggagcgctgatgtagcc
gtcttcatacagggcgtgacattgcttgcagctctggtgttcagcctctatccgctgttg
agaatcacaaaacggacgctactgagcaacttgccccaccttctcttgatggttggacta
acagtcggtggcttctggctcattgtttga
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