Synechococcus sp. SynAce01: BM449_10645
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Entry
BM449_10645 CDS
T08413
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
syny
Synechococcus sp. SynAce01
Pathway
syny03030
DNA replication
syny03430
Mismatch repair
syny03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BM449_10645
03430 Mismatch repair
BM449_10645
03440 Homologous recombination
BM449_10645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syny03032
]
BM449_10645
03400 DNA repair and recombination proteins [BR:
syny03400
]
BM449_10645
Enzymes [BR:
syny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BM449_10645
DNA replication proteins [BR:
syny03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BM449_10645
DNA repair and recombination proteins [BR:
syny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BM449_10645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
APD48603
LinkDB
All DBs
Position
2097836..2101393
Genome browser
AA seq
1185 aa
AA seq
DB search
MAFVPLHNHSDYSLLDGASQLPQMVERALELGMPALALTDHGVMYGAIELLKLCTKAGIK
PIIGNEMYVINGSIDDPQPKKERRYHLVVLAKNATGYRNLVKLTSLSHLRGMRGRGIFSR
ACIDKQLLRQYSEGLIVATACLGGEIPQAILKGRPDVARDVARFYQELFGDDFYLEIQDH
GSPEDRIVNGEIVRIAAELGIELIATNDAHYLTRHDVEAHDALLCVLTGKLVSDVKRLRY
TGTEYIKSEEEMGRLFADHLEPAVVARAIANTVVVADKVEAYDILGRQQMPRFPIPAGHT
AVSYLREVSEQGLRQRQGLQDSDPFEPLYGERLAFELQVMEQMGFPTYFLVVWDYIRYAR
EQGIPVGPGRGSAAGSLVAYALGITALDPVEHGLLFERFLNPERQSMPDIDTDFCIERRS
EVIEYVTERYGADKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRGKPAK
LAEMIGPDSPAPEFREKYEKDPVVQRWVDMARRIEGTNKTFGVHAAGVVIAAEPLDELVP
LQRNNDGQVITQYFMEDVEAMGLLKMDFLGLRNLTMIEKTIDLVEQNTGERIDPDALPAF
DDATFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDAGLIPKFI
NRKHGREAIEFACPALEPILKETYGIMVYQEQIMRIAQDLAGYSLGEADLLRRAMGKKKV
AEMQKHRHQFVEGATSRGVMGTVAEALFEQMVLFAEYCFNKSHSTAYGAVTYQTAYLKAH
FPVAYMAALLTVNAGSTDKVQRYIANCQAMGIEVMPPDLNASGIDFTPTGERILFGLSAV
RNLGDGAIRQLLEARISGGPFVSLADLCDRIPGQLLNRRALESLIHCGALDALEAGGNRA
QLMADLDLVLDWATSRAKDRASGQGNLFDLLAGAAADPAPDSGTPSATSSPAGGDLATAP
KAAPVADYPPNEKLKLEKELVGFYLSDHPLKQLSGPMRLLTPIGLASLEEQADKARVSVV
AMVAELRPLTTRKGDRMAVLQLEDLSGSAEAVVFPKTYARLADHLMVDARLLLWASVDRR
DDRVQLIVDDCRVIDELQLLMVDLDAEQAADISVQHQLRECLVQHRLGQDDAGLRIPVVA
LVHDQEQARYVRLGHQFCVRDGEAALHTLTAAAFTARLRTPLQLV
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttggccttcgtccccctccataaccacagcgactacagcctgctggacggggccagccag
ttgccgcagatggtcgagcgggctttggagctgggtatgccggcgctggcgctcaccgat
cacggtgtgatgtatggggcgatcgagctgctgaagctctgcaccaaggcgggcatcaag
ccgatcatcggcaacgagatgtatgtgatcaacggctcgatcgatgatccgcagccgaag
aaggaacgccgttaccacctggtggtgctggccaagaacgccaccggctatcgcaatctt
gtcaagctcaccagcctcagccacctgcgcggcatgcgcggccggggcatcttttcgcgc
gcctgcatcgacaagcagttgctgcgccagtacagcgagggactgatcgtggccaccgcc
tgcctgggcggtgagattccccaggcgattctcaagggtcgcccggatgtggcccgcgat
gtggcccgcttctatcaggagctcttcggcgacgacttctacctggagatccaggaccat
ggctccccggaagaccggatcgtcaacggcgagatcgtgcgcatcgctgccgagctgggc
atcgagctgatcgccaccaatgacgcccactacctcacccgccacgacgtggaggcccac
gacgccctcctctgcgtgctcaccggcaagttggtgagcgacgtcaaacgcctgcgctat
acgggcaccgaatacatcaagagtgaggaggagatggggcggctgttcgccgaccatctc
gagcctgcggtggtggcccgggcgatcgccaacaccgttgtggtggcagacaaagtggag
gcctacgacatcctcgggcgtcagcagatgccccgcttcccgatcccggctgggcatacg
gcggtgagctatctgcgcgaggtgagcgagcagggcctgcgccagcgtcagggcttgcag
gattcagacccgttcgagcctctgtatggcgagcggctggcctttgagctgcaggtgatg
gagcagatgggcttccccacctacttcctggtggtctgggattacatccgctatgcccgc
gagcaaggcatcccggtggggcccgggcgtggctcggcggccggctccctggtggcttac
gccctggggatcacggcgctggatccggtggagcacggcctgctgttcgagcgcttcctc
aacccggagcgccagtcgatgcctgacatcgacaccgacttctgcatcgagcgccgcagc
gaggtgatcgagtatgtgacggagcgctatggcgccgacaaggtggcccagatcatcacc
ttcaaccgcatgacctcgaaggcggtgctcaaggatgtggcccgggtgctcgacattccc
tatggcgatgccgaccgcctcgccaagttgattcctgtggtgcgcggcaagcccgccaag
ctcgccgagatgatcggccccgattcaccggcgccggaattcagggagaagtatgagaaa
gatccggtggtgcagcgctgggtggatatggcccgccggatcgagggcaccaacaaaacc
tttggtgttcatgccgccggggtggtgattgccgcggaaccgctcgatgaactggtgccg
ctgcagcgcaacaacgacggccaggtaatcacccaatacttcatggaagacgtggaggcg
atggggctgctgaagatggacttcctcggtctgcgcaacctcaccatgatcgagaaaacc
attgatctcgttgagcagaacactggcgaaaggatcgatcctgatgcccttccggccttt
gacgacgccaccttcgccttgctcgcccgcggcgatctcgaaggtatcttccagctcgaa
tcgagcggcatgcgccagatcgtgcgcgatctcaagccctcctccctcgaagacatctct
tcgatcctggcgttgtatcggccgggcccgctcgatgccggcctgatacccaagttcatc
aaccgcaagcacggccgtgaagcgattgagttcgcctgtccggcgctggagccgatcctg
aaggaaacctacgggatcatggtgtatcaggagcagatcatgcggatcgcccaggatctg
gctggttattcactcggtgaagccgacctgctgcgccgggcgatgggcaaaaagaaagtg
gccgagatgcagaaacaccgccatcagttcgtggagggtgccacctcccgaggtgtgatg
ggcacggtggctgaagccttgtttgagcagatggtgttgttcgctgaatactgcttcaac
aagagccattccaccgcctacggcgcggttacgtaccaaacggcttacctcaaggcgcac
ttcccggtcgcctacatggcggcgctgctcacggtcaatgccggcagcaccgacaaggtg
cagcgttatatcgccaactgtcaggcgatgggcatcgaggtgatgccgcccgacctcaat
gcctccggcatcgacttcaccccaaccggtgagcgcatcctgtttggcctctcggcggtg
cgcaacctcggcgatggtgcgatccgccagctgctggaagcccgcatcagcggcggaccg
ttcgtgagcctggccgacctctgcgaccgcatccccggccagctgctcaaccgccgggcg
ctggaatcgctgatccactgcggggcgctcgatgcccttgaggctggtggcaaccgcgcc
cagttgatggcggatctggatctggtgctcgattgggccacctcccgcgcgaaagaccgg
gccagcggccagggcaacctcttcgatctgctcgccggtgcggctgcggatcctgccccg
gattcaggaactccttcagcaacgtcatctccggctggtggcgatctggccacggcgccg
aaggccgctcctgtggccgattacccccccaacgagaagctgaaactggagaaggagctg
gtgggcttctacctctccgaccatccgctcaagcagctctcggggccgatgcggctgctc
accccgatcggcctggccagcctggaggagcaggccgacaaggcccgcgtgagtgtggtg
gcgatggtggctgaactgcggcccctgaccacgcgcaagggcgatcggatggccgtgctc
cagctcgaagatctcagcggcagcgccgaagcggtggtgttcccgaaaacctatgcccgc
ctggctgaccacctgatggtggatgcccgcctgctgctctgggcctctgttgaccgccgc
gacgaccgggtgcagctgatcgttgacgattgccgcgtcatcgacgagctgcagttgctg
atggtggacctcgatgccgagcaggccgccgacatcagcgtgcagcaccaactgcgcgag
tgcctggtgcagcaccgcctcggccaggacgacgccggcctgcgcatccccgtggtggcg
ctggtgcatgaccaggagcaggcccgctatgtgcgcctcggccaccagttctgcgtgcgc
gatggcgaagccgccctccataccctcacggccgctgccttcaccgcccggttgcgcaca
ccgctgcagctggtctga
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