Synechococcus sp. SynAce01: BM449_13575
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Entry
BM449_13575 CDS
T08413
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
syny
Synechococcus sp. SynAce01
Brite
KEGG Orthology (KO) [BR:
syny00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BM449_13575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syny03021
]
BM449_13575
Transcription machinery [BR:
syny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BM449_13575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
APD49081
LinkDB
All DBs
Position
complement(2682206..2683672)
Genome browser
AA seq
488 aa
AA seq
DB search
MSPVAAVKSKKPDQEILTVASLSGAGVSVEAKPKASRSKPKDSAAKASSKSKAAAEPSTA
ETPAVASNKVTRTRKPPAAKAAAVKTSTTKTSTTKASSAKPASGKAVSSKAVASKTSGKT
KVGASLPASAAASQQQDSAAEQLLTAADAATATKEKKAAGAKALASIKVGPKGVYTEDSI
RVYLQEIGRIRLLRPDEEIELARKIADLLLLEELANQFEQDNGHYPDVKEWAVLVDMTLL
KFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEK
GYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEI
AESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDL
EGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRN
GVLKEYIK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagtcctgtcgccgccgtcaaatccaagaagcccgaccaggaaattctcacggtcgct
tccctttcgggagcaggggtgagtgtcgaggcaaagccgaaggcttcacgaagcaagcca
aaggattccgcagccaaggccagctcgaagtccaaggcggcagccgagcccagcacggct
gagacccctgccgtggcctccaacaaggtgacgcgcacccgtaagcctccggcggcgaag
gctgccgccgtcaaaacttcgacgaccaaaacctccacaaccaaagcctcctccgcgaag
ccggcttcaggaaaagcggtttccagtaaggcggttgccagcaagacctccggcaagacc
aaggtgggtgcctcccttcctgcctccgccgctgcgagccagcagcaggacagcgccgcc
gaacaactgttgacagcggccgatgccgcgacggcgaccaaggaaaagaaagccgctggg
gccaaggccttggcgagcatcaaggtgggacccaaaggggtgtacaccgaggattcgatc
cgggtctatctccaggaaatcggccgtatccgtctgttgcgcccagacgaagagatcgag
ctggcgcgcaagatcgccgacctgctgctgcttgaggaactggcgaaccagttcgagcag
gacaacggtcactaccccgatgtgaaggagtgggccgttctcgttgacatgaccttgctg
aagttccgtcgccggctgatgctgggccggcgggccaaggagaagatggtgcagtcgaac
ttgcgcctggtggtgtcgatcgccaagaagtacatgaatcgggggctttcctttcaggac
ctcattcaagaaggaagcctgggcctgatccgtgccgccgagaaattcgaccacgaaaag
ggctataagttctccacctatgccacttggtggatccgtcaggcgatcacccgcgccatt
gctgaccagagccgcacgatccgtctgccggttcacctctacgaaaccatctcccgtatc
aagaaaaccaccaaggttctcagtcaagagttcggccgtaagccaacggaagaggagatc
gctgaaagcatggagatgacgatcgaaaaacttcgtttcatcgccaaatcggcccaactg
ccgatatccttggaaactccgattggtaaggaggaggattcacgcctcggtgatttcatc
gaagccgatattgagaatcccgagcaagatgtggccaagaatctgctgcgggaagatctg
gagggcgtattggcaacgctcagccccagggagcgtgacgtgctccgccttcgttatggc
ctcgacgatggccgcatgaaaacccttgaagagattggccagatctttgatgtcaccagg
gaacgcatccgccagatcgaggccaaggcgctgcgcaagctgcgccaccccaaccgcaac
ggtgtgctcaaggaatacatcaagtaa
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