Synechococcus sp. CBW1002: H8F24_01205
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Entry
H8F24_01205 CDS
T10440
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
synz Synechococcus sp. CBW1002
Pathway
synz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
synz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H8F24_01205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synz03021
]
H8F24_01205
03400 DNA repair and recombination proteins [BR:
synz03400
]
H8F24_01205
Enzymes [BR:
synz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H8F24_01205
Transcription machinery [BR:
synz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H8F24_01205
DNA repair and recombination proteins [BR:
synz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H8F24_01205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Pkinase_fungal
Motif
Other DBs
NCBI-ProteinID:
QPN60154
LinkDB
All DBs
Position
complement(239278..241182)
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AA seq
634 aa
AA seq
DB search
MSNSNLRTENHFDYVKITLASPERIMQWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWY
LKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDKGDHKDLTYKQLLTEDEWLEIEDQIYAE
DSEIENEPQVGIGAEALKQLLEDLDLPVIAEQLREDIAASKGQKRAKLIKRLRVIDNFIA
TGAKPDWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLGRLQEILAPE
IIVRNEKRMLQEAVDVLIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIARADDEVM
QVLQEVIEGHPILLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVH
VPLAIEAQTEARMLMLASNNILSPATGEPIITPSQDMVLGAYYLTAVKPDYDKPAFGDRR
RSFASLDDVIAAFEEKHLTLHDWVWVRFSGEVESDDEESAPLQEETLSDGTRIEQWKYRR
DRFDEDGALISRYLLTTVGRVVINHTIIDAVAAA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacagcaacctccgcaccgagaatcacttcgactacgtcaagatcacgctcgct
tcccccgagcggatcatgcagtgggggcagcgcacgctgcccaacggtcaggtggtgggt
gaggtgaccaagccggaaacgatcaactaccgcacgctcaagccggagatggacggcttg
ttctgcgagaagatcttcggcccgtcgaaggactgggagtgtcactgcggcaagtacaag
cgcgtgcggcaccgcggcatcgtctgcgagcgttgcggtgtcgaggtgaccgagagccgc
gtgcggcgtcatcgcatgggcttcatcaagctggcggcccccgtctcgcatgtgtggtat
ttgaagggaatccccagctacgtggcgattctgctcgacatgcccctgcgggatgtggag
cagatcgtctacttcaactgctacgtggtgctcgacaagggcgatcacaaggatctcacc
tacaagcagttactcaccgaggatgagtggcttgaaatcgaagatcagatttacgccgag
gattcggagatcgagaatgagccccaggtggggatcggcgccgaggccctcaagcagctg
ctcgaagaccttgatctgcccgtgatcgctgagcagctgcgcgaggatatcgccgccagc
aagggtcagaagcgggccaaactgatcaagcgtctgcgcgtgatcgacaacttcatcgcc
accggtgccaagcccgactggatggtgctggatgtgatcccagtgatcccgcccgatctg
cgtccgatggtgcagctcgatgggggtcgctttgctacctccgacctgaacgatctctat
cgtcgcgtcatcaaccgcaacaaccggttaggccgtctgcaggagatccttgctcctgag
atcatcgtccgcaatgaaaagcggatgctgcaggaagccgttgatgttctgatcgataac
ggccgccgaggccgcaccgtggtgggggccaacaaccgtgccctgaagtcgctgagcgac
atcatcgagggcaagcagggccgtttccgtcagaacctgctcggcaagcgggtcgactac
tccggtcgttccgtgatcgtggtgggccccaagctcaagatgcaccagtgtggtctgccc
aaggagatggcgatcgagctgtttcagccgttcgtgatccatcgcctgatccgtcagaac
atcgtcaacaacatcaaggctgccaagaagctgattgcgcgcgccgatgatgaggtgatg
caggtgcttcaggaggtgatcgaaggccatccgatcctgctcaaccgggccccgaccctg
caccgcctcggcattcaggcgttcgagccgaagctggtcgatgggcgtgcgattcagttg
cacccgctggtctgccccgccttcaacgccgactttgatggtgaccagatggctgtgcac
gtgcccctggcgattgaggcccagacggaagctcgcatgttgatgctggccagcaacaac
atcctctcgccggccacgggtgagccgatcatcaccccctcccaggacatggtgctcggc
gcctactacctcacggccgtcaagcccgactacgacaagcctgcgtttggcgatcgccgc
cgcagcttcgccagcctcgacgatgtgattgccgcttttgaggagaagcacctcaccctg
catgactgggtttgggtgcggttctccggtgaggtggagagcgacgacgaggagagcgct
cccttgcaggaggagaccctcagcgacgggacccgcatcgagcagtggaagtatcgccgc
gatcgtttcgatgaagacggcgccttgatcagccgctatctgctcaccacggtgggtcgt
gttgtgatcaatcacaccatcatcgacgcggtggctgccgcctga
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